Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1268g00005 ATGGGTCTCTGCTTCTCCTCCTCTTCCTCTCCTTCGCCCAACCCTCCTAACTACTCAGGTTCAACGAGTAACGTGGGGTTCTCCGCCACCACCAGCAGCTTCGGGAAGAGCCAATTCTCGGAGATTGCGAGTGGGAGCATCGACAGCGAAGGGTCTCTTCCGTTTTGTTCCCCTGACGGCCAGATTCTGGAACGGCCCAACTTGAAGGAGTTCAGTTTCGGGGACCTGAAATCCGCGGCCAAGAGTTTCAAGGGCGACACATTGCTGGGTGAAGGTGGGTTTGGCAGAGTCTACAAGGGCTGGTTGGATGAGAAGAACCTTACCCCTGCCAAACCAGGCTCTGGCATGGTCGTCGCTATCAAAAAATTGAACCCCGAAAGCACCCAAGGCTTTCAAGAATGGAAGTCAGAAGTGAACTTTTTGGGAAGGCTTTCCCACCCCAACCTCGTCAAGTTATTGGGCTACTGTTGGGACGAGGATGAACTTCTTCTTGTCTACGAGTTCATGCCCAAGGGAAGCTTGGAGAATCATCTCTTTCGAAGAAATCCTAACATAGAACCACTTTCTTGGAACACCCGGCTTAAAATAGCTATTGGTGCTGCTCGTGGACTTGCATTCTTGCACACATCGGAAAAAGTTATATATAGAGATTTCAAGGCCTCAAATATACTCCTTGATGGCAATTACAATGCAAAAATATCAGATTTTGGCCTGGCTAAATTGGGACCGTCTGGGGGACAGTCACATGTAACTACAAGAGTCATGGGCACCTATGGTTATGCTGCACCAGAATATATTGCAACAGGGCACTTGTATGTGAAGAGTGATGTGTATGGATTTGGTGTAGTGCTTCTTGAAATACTGACAGGCATGAGGGCACTTGACACAAGAAGGCCAACAGGGCAGCAGAACCTGGTTGAATGGACCAAATCCTGTCTCTCTTCCAAAAAAAAGTTGAAAACAATTATGGATGGTAAGATAGAGGGTCAATATTCACCCAAAGCTGCATTACAAGCAGCACAACTTACTCTAAAATGCCTAGAGCATGACCCTAAACAACGTCCTTCAATGAAAGAAGTTCTTGAGGGATTGGAAGCCATTGAAACCATCCATGAAAAAACCAAGGAATCCAAAACCCGCAATTCTCATAACATTTCTCATCAGCATTCTCGGCAGAGAGTTGTGAGGGTATAA 1194 0.4682 MGLCFSSSSSPSPNPPNYSGSTSNVGFSATTSSFGKSQFSEIASGSIDSEGSLPFCSPDGQILERPNLKEFSFGDLKSAAKSFKGDTLLGEGGFGRVYKGWLDEKNLTPAKPGSGMVVAIKKLNPESTQGFQEWKSEVNFLGRLSHPNLVKLLGYCWDEDELLLVYEFMPKGSLENHLFRRNPNIEPLSWNTRLKIAIGAARGLAFLHTSEKVIYRDFKASNILLDGNYNAKISDFGLAKLGPSGGQSHVTTRVMGTYGYAAPEYIATGHLYVKSDVYGFGVVLLEILTGMRALDTRRPTGQQNLVEWTKSCLSSKKKLKTIMDGKIEGQYSPKAALQAAQLTLKCLEHDPKQRPSMKEVLEGLEAIETIHEKTKESKTRNSHNISHQHSRQRVVRV 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1268g00005 397 FunFam Serine/threonine-protein kinase PBS1 169 383 - -
Vium1268g00005 397 CDD STKc_IRAK 89 367 - -
Vium1268g00005 397 MobiDBLite consensus disorder prediction 373 397 - -
Vium1268g00005 397 Gene3D Phosphorylase Kinase; domain 1 67 168 - -
Vium1268g00005 397 ProSiteProfiles Protein kinase domain profile. 83 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1268g00005 397 FunFam Serine/threonine-protein kinase BIK1 51 168 - -
Vium1268g00005 397 MobiDBLite consensus disorder prediction 1 21 - -
Vium1268g00005 397 ProSitePatterns Protein kinases ATP-binding region signature. 89 122 IPR017441 GO:0005524
Vium1268g00005 397 Gene3D Transferase(Phosphotransferase) domain 1 169 394 - -
Vium1268g00005 397 PANTHER OS01G0588500 PROTEIN-RELATED 31 368 - -
Vium1268g00005 397 SUPERFAMILY Protein kinase-like (PK-like) 63 365 IPR011009 -
Vium1268g00005 397 ProSitePatterns Serine/Threonine protein kinases active-site signature. 213 225 IPR008271 GO:0004672|GO:0006468
Vium1268g00005 397 Pfam Protein tyrosine and serine/threonine kinase 87 363 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1268g00005 Vium-Chr1268 38481 43034 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1268g00005 59 364 Glycoside Hydrolase AT3G07070 49.351 2.22e-102 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vium1268g00005 PK_Tyr_Ser-Thr 3.9e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1268g00005 - - gmx:100794193 661.759