Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12685g00001 ATGATATTGGATGAGTGGAAAAGACTCTACTCAAACACCAAGACCAACTTCCGCGAGGTTGCAATCAAAGGATTTTGGGACATGTATGATCTAGAGGGTTATTCTCTCTGGTTCTGTGATTACAAATACTACGACGAAAACATTGTTTCCTGTGCATTAAACACGGTTGGTGGTTTTCTTCAGCAGATGGATCTGGCTCGCAAGTATGCTTTTGGAAACATGCTTGTAATTGGATCACAAACACCATTTAAGGTGAAGGGGTTGTGGCTTTTGCGTAGGCAAGAGATTCCACAATTTGTGATTGACGAGTGTTATGATATGGAGCTATACGAGTGGACCAAGGTTGACATCTATGACGATCGGATGATTGAGGATTATGAACCATTTGAGGGAGAGCCTCTTCTGGATGCTACGTGCTTCAACTGA 426 0.4249 MILDEWKRLYSNTKTNFREVAIKGFWDMYDLEGYSLWFCDYKYYDENIVSFXALNTVGGFLQQMDLARKYAFGNMLVIGSQTPFKVKGLWLLRRQEIPQFVIDECYDMELYEWTKVDIYDEXRMIEDYEPFEGEPLLDATCFN 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12685g00001 143 ProSiteProfiles Elongation factor 1 (EF-1) gamma C-terminal domain profile. 1 143 IPR001662 GO:0003746|GO:0006414
Vium12685g00001 143 SUPERFAMILY eEF1-gamma domain 2 142 IPR036433 GO:0003746|GO:0006414
Vium12685g00001 143 PANTHER ELONGATION FACTOR 1-GAMMA 1-RELATED 1 143 IPR044628 GO:0004364
Vium12685g00001 143 SMART EF1G_2 1 96 IPR001662 GO:0003746|GO:0006414
Vium12685g00001 143 Gene3D Translation elongation factor EF1B, gamma chain, conserved domain 1 143 IPR036433 GO:0003746|GO:0006414
Vium12685g00001 143 Pfam Elongation factor 1 gamma, conserved domain 1 96 IPR001662 GO:0003746|GO:0006414
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12685g00001 Vium-Chr12685 3734 4576 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12685g00001 1 142 Eukaryotic Initiation Factors Gene Family AT1G57720 76.351 1.70e-80 241
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12685g00001 K03233 - gmx:100795680 263.077