Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1266g00006 ATGGAGTCAGAAGAAGCATCCACCGCCAAGCTCCGTCTCATGTGCAGCTACGGCGGCCACATACTCCCCCGTCCCGGCACCAGCTCCCTCTTCTACGCCGGCGGCGAAACCCGTATCCTCTCCATCCAGCACCGCACCCTCGCCACGCTCTCCTCCTTCCGCACCCATCTCTCCACCCTCCTCTCTCTGAAATACCCCTTCACTCTCAAGTACCAGCTCCCCCACCTTCACCTTGATTCTCTCATCTCCCTCGCCTCCAACGAAGACCTCCACATCCTCGTCGACGAGTACCACAACTCCTCTTCCCGCATCAGACTCTTCGTCTTCCCTGCTTTCCGCCACCCCAAAACCGAGTCATGGTTCTTGGACTCCCTCAAGAGCTCCTCCATCATGCACCACTCCTTCCCTCTCGACACCACCTCCTCTTTCGCTTCCTCTCTTCTTCCTCCATCCCTCCCCTCATCTCTTCCAAGTGATAGTACTGTTTCCAGCATCATTTCGCAGCGGCAGAATACGTGTTATCAGGACTCTGTGCTTCATGTTTCGGAGGCCACTCTCAGTGCTCAGACTGTTCAAGTTGAAAGTCAGAACCTCTTTGTTTCCAATAATGCAAATTTGAATGCACGGTATTCTTCATTTCCACGGTTTAATTCAGTGGTGCAATCTGCTACACGCAATTTACCCCTTCATGCTCCCCTGAACTCATTACCGACTGGCCACTGTATTTATCAGCAATCTCGTCCTTCGACGCATCTGGTTTATCAAACCAATCCTATTTTCCCTGTATACCTCGTACCTGTTACTTTGCCTATGACTGCCTCTACCCAAGCATCAATGAATCTAAATCTTTCATCCATAGGTTCCCGTATACCACGTAACTCTACCTCTGACTCTCAGAACTATTTAACACACACAGAAACTGCAGCACTCGTTCACGTCCCTTACAACGAAAATCAGGCACCGCAGATTGATGTTAGTCCAATGCATCATATTCAATCTCAATCTCAGAACATATCTATTACTTCCGTGGAATCAGCCGAGAGTGGAAATGAACTTGACAACAACCTTACTCGTGATCAGATATACAAATCTCAGCCCCCACCTCCGGCATTGCCTTCTAAACACCAAACCGTGAGAAAAGCCACCCCAGAGTTGTTATCTGAAGCTCTTGCTCAGTTGCATGTGGATAGCCTCAAGCCGCAGCACACAGAAATATCACAGCCACATTGA 1230 0.4976 MESEEASTAKLRLMCSYGGHILPRPGTSSLFYAGGETRILSIQHRTLATLSSFRTHLSTLLSLKYPFTLKYQLPHLHLDSLISLASNEDLHILVDEYHNSSSRIRLFVFPAFRHPKTESWFLDSLKSSSIMHHSFPLDTTSSFASSLLPPSLPSSLPSDSTVSSIISQRQNTCYQDSVLHVSEATLSAQTVQVESQNLFVSNNANLNARYSSFPRFNSVVQSATRNLPLHAPLNSLPTGHCIYQQSRPSTHLVYQTNPIFPVYLVPVTLPMTASTQASMNLNLSSIGSRIPRNSTSDSQNYLTHTETAALVHVPYNENQAPQIDVSPMHHIQSQSQNISITSVESAESGNELDNNLTRDQIYKSQPPPPALPSKHQTVRKATPELLSEALAQLHVDSLKPQHTEISQPH 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1266g00006 409 SMART PB1_new 25 111 IPR000270 GO:0005515
Vium1266g00006 409 Pfam PB1 domain 31 110 IPR000270 GO:0005515
Vium1266g00006 409 SUPERFAMILY CAD & PB1 domains 28 111 - -
Vium1266g00006 409 MobiDBLite consensus disorder prediction 329 362 - -
Vium1266g00006 409 MobiDBLite consensus disorder prediction 329 384 - -
Vium1266g00006 409 CDD PB1_UP2 14 109 - -
Vium1266g00006 409 PANTHER OS05G0427100 PROTEIN-RELATED 7 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1266g00006 Vium-Chr1266 55131 56841 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1266g00006 8 109 MAP Kinase Kinase Kinase AT1G79570 41.667 7.65e-20 90.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1266g00006 - - var:108318981 763.451