Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12667g00001 ATGTTCTCAAAACTTCATCCACAGCACCAACCTTTTCAGTTCTCTCGGGAATGTCAAACATCCGAGGAGGATGACAGCCGGAGTAACGGGGGGCCCAACCTCGCGGCCCAGAAGCCCGTCTGCACAGGGGATGGAGCTACAATTGAAGTAGTGCGGAGGCCCAGGGGCCGCCCACCGGGCTCCAAAAACAAGCCCAAGCCGCCTCTTATTATTACCCGCGAGCCAGACCCCTCCATGAGCCCCTTCATTTTAGAAATCCCCGGCGGAAACGACGTCGTGGATGCCCTAGCCCGGTTCAGCCACAGAAAGAACACGAGCCTCTGTGTCCTCAACGGTTCGGGAACAGTCGGTAACGTCACTCTCCGCCAACCCTCCGTCGCTCCCGTCGGCACTGTTACCTTCCATGGCCGCTTCGACATCCTCTCCATGTCCGCCACTTTCCTCCTCCACGCAACCCTGCCGTCGGCCTCTCCCTCTACCTTCGCCGTCTCGCTCGCCGGACCGCAGGGGCAGATCGTCGGCGGACACGTCGCTGGAAGGCTGCTCGCTGCTGGGACGGTGTTCATCGTCGCCGCGTCGTTCAACAACCCCTCCTTCCACCGGCTCTCGTCAGAGGACGACGCGCAGAATAGCTCCGCGTCCGGCGGCGGTGTCGGCGATGAGCAATCGCCGCCTGCCTCTACTGGCGGCGCGGAGAGCGGACAACTTCCGGCGGAGTCGTGTATGTACAGCTGTCACCTCCCTTCGGATGTGATTTGGGCTCCGACGGCCAGACCACCTTTCTGA 786 0.6183 MFSKLHPQHQPFQFSRECQTSEEDDSRSNGGPNLAAQKPVCTGDGATIEVVRRPRGRPPGSKNKPKPPLIITREPDPSMSPFILEIPGGNDVVDALARFSHRKNTSLCVLNGSGTVGNVTLRQPSVAPVGTVTFHGRFDILSMSATFLLHATLPSASPSTFAVSLAGPQGQIVGGHVAGRLLAAGTVFIVAASFNNPSFHRLSSEDDAQNSSASGGGVGDEQSPPASTGGAESGQLPAESCMYSCHLPSDVIWAPTARPPF 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12667g00001 261 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 21 230 IPR014476 GO:0003680
Vium12667g00001 261 PIRSF ESCAROLA 1 252 IPR014476 GO:0003680
Vium12667g00001 261 Gene3D - 80 212 - -
Vium12667g00001 261 MobiDBLite consensus disorder prediction 201 218 - -
Vium12667g00001 261 SUPERFAMILY AF0104/ALDC/Ptd012-like 78 206 - -
Vium12667g00001 261 Pfam Plants and Prokaryotes Conserved (PCC) domain 81 196 IPR005175 -
Vium12667g00001 261 MobiDBLite consensus disorder prediction 1 17 - -
Vium12667g00001 261 FunFam AT-hook motif nuclear-localized protein 80 213 - -
Vium12667g00001 261 ProSiteProfiles PPC domain profile profile. 76 215 IPR005175 -
Vium12667g00001 261 MobiDBLite consensus disorder prediction 201 236 - -
Vium12667g00001 261 MobiDBLite consensus disorder prediction 1 76 - -
Vium12667g00001 261 CDD DUF296 81 194 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12667g00001 Vium-Chr12667 1575 2965 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12667g00001 42 260 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 62.609 3.31e-91 269
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12667g00001 - - gmx:100811053 394.43