Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1264g00029 ATGGCTTTTATGTCTGGACTTCAGCATCTACTTCGCCAATCCCCACTTCTTCATTCGCACCATGCTTCCATTCGTTTAGCCTCAACTCTCACCTCCCCCAAACTTTTCGTCAGCGGTCTCTCTAGATTGACAACAGATGAAAAACTTAAGGAAGCATTTTCTTCATTCGGGCAGCTGGTGGAAGCTAAGGTGATAACTGATAGAGCCTCTGGAAGATCAAAGGGATTTGCCTTTGTAACTTATACAACCATAGAAGAAGCTGAAAAGGCTAGAGAAGGAATGAATGCTAAATTTTTGGATGGATGGGTTATATTTGTTGATCCTGCTAAACCAAGAGAGACTAGACCTCCTCAGCAATCACGGCCCCAACCCTCTGAATCAGGTTTCACTGTTAACAAAACAGTTGGGTGGTGTGGTTGA 420 0.4381 MAFMSGLQHLLRQSPLLHSHHASIRLASTLTSPKLFVSGLSRLTTDEKLKEAFSSFGQLVEAKVITDRASGRSKGFAFVTYTTIEEAEKAREGMNAKFLDGWVIFVDPAKPRETRPPQQSRPQPSESGFTVNKTVGWCG 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1264g00029 139 MobiDBLite consensus disorder prediction 110 139 - -
Vium1264g00029 139 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 35 101 IPR000504 GO:0003723
Vium1264g00029 139 Gene3D - 21 133 IPR012677 -
Vium1264g00029 139 PANTHER NUCLEOLAR PROTEIN 8 21 138 - -
Vium1264g00029 139 FunFam RNA binding protein 20 133 - -
Vium1264g00029 139 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 33 111 IPR000504 GO:0003723
Vium1264g00029 139 SUPERFAMILY RNA-binding domain, RBD 31 130 IPR035979 GO:0003676
Vium1264g00029 139 SMART rrm1_1 34 107 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1264g00029 Vium-Chr1264 253444 255967 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1264g00029 35 115 Eukaryotic Initiation Factors Gene Family AT3G16380 39.506 9.47e-14 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1264g00029 - - gmx:100306326 238.424