Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1264g00027 ATGACATCGTTCTTAAAGCCCGAGAATGCTCTGAAAAGGGCGGAAGAGTTAATCAATGTTGGGCAGAAGCAGGATGCTCTACAGACTCTGCATGACCTTATTACCTCAAAGAGATACAGAGCATGGCAGAAGACACTTGAAAGGATTATGTTTAAGTATGTTGAACTTTGTGTTGACATGCGCAAAGGCCGGTTTGCAAAAGATGGGCTTATTCAGTATAGGATAATATGTCAACAAGTCAATGTTAGTTCACTGGAGGAGGTGATCAAACACTTTATGCACCTGTCAACTGAGAAAGCTGAACAAGCTCGGAGTCAAGCACAAGCATTAGAAGAAGCCCTTGATGTTGATGATTTAGAGGCTGATAAAAGGCCAGAGGATTTGATGTTGAGCTATGTCAGTGGTGAGAAAGGAAAGGACAGATCTGACCGGGAGCTTGTCACCCCATGGTTTAAATTTCTTTGGGAAACTTACAGGACAGTGCTTGAGATACTGCGGAACAACTCAAAACTGGAAGCATTATACGCTATGACAGCTCATCGAGCTTTCCAGTTCTGTAAGCAATATAAACGAACAACAGAGTTCCGCAGACTGTGTGAAATCATAAGAAACCATTTGGCTAATCTCAACAAATACCGTGACCAACGAGACAGGCCTGACCTTTCAGCTCCTGAAAGCTTACAACTGTATCTTGATACTAGAGTTGAGCAGCTGAAAATTGCCACTGAACTTGAACTCTGGCAGGAAGCCTTCAGATCAGTAGAGGATATACATGGGCTGATGTGCCTGGTCAAGAAAACTCCCAAGCCATCCTTGATGGTTGTTTACTATGTGAAGCTGACAGAAATATTTTGGATATCGTCAAGTCATCTTTATCATGCATATGCATGGTTCAGGCTCTTTTTATTGCAGAAAAGCTTCAATAAGAACCTGAGTCAGAAGGATTTGCAACTAATAGCTTCATCTGTCGTTCTTGCTGCACTTTCAGTGCCTCCTCATGACCGTACACACGGTGCCTCTCATTTGGAACTGGAGCATGAAAAAGAGAGAAATTTGAGAATGGCCAATCTCATTGGCTTTAATCTTGAGAGTAAACCTGAAAGCAGAGAAATGCTCTCAAGATCATCACTTCTTGCTGAACTGGCATCCAAGGGAGTGATGTCTTGTGTGACTCAGGAAGTGAAAGATGTTTACCATCTTTTGGAGCATGAATTTCATCCCTCAGATCTTGCATTAAAAGCACTGCCCTTGATAACTAAAATCTCAAAGTTAGGGGGGAAGCTTTCTACAGCTTCTTCTGTTCCAGAAGTACAGTTGTCTCAATATGTACCATCACTGGAAAGACTAGCTACTATGAGGTTGCTGCAGCAGGTGTCCAATGTTTATCAGACAATGAAGATTGAGACTTTATCTGGGATGATTCCGTTCTTTGACTTCTCTGTAGTTGAAAAGATTGCCGTAGATGCTGTAAAGCAGAAGTTTGTATCGATGAAAGTTGATCACATGAAAAATGTTGTGATCTTTTGCAAAACGAGTCTTGAGTCAGATGGCTTAAGGGATCACTTGGCCAATTTTGCTGAACAATTAAATAAGGCCCGACAAATGATTTATCCTCCTGATAGGAAACCATCTAAACTTGGAGCTTTACTTCCAACTTTGACAGAGGTTGTTGCCAAAGAACACAAGAGGCTTCTTGCCCGAAAATCAATCATTGAGAAGCGTAAAGAAGAACAAGAACGACAGCTTCTTGAAATGGAACGAGAGGAGGAGTCAAAAAGACTAAGACTTCAGAAAATAACTGAAGAAGCAGAACAAAGACGGCTTGCCACCGAGTATGAACAGAGGAAAAATCAGAGGATCCTCAGGGAGATAGAAGAGAGGGAAATTGAAGAAGCCCAAGCTCTACTTCAGGAAGCTGAAAAGCGTATTAAAAAGAAGGGGAAAAAGCCAATAATAGAGGGAGACAAAATGACCAAACAGACCTTGATGGAGTTAACTTTGACTGAACAACTCCGGGAAAGACAGGAAATGGAAAAGAAGTTGCAGAAGTTAGCAAAAACAATGGATTATTTGGAAAGAGCAAAAAGAGAGGAGGCTGCTCCCCTTATTGAAGCTGCGTATCAACAACGTTTAGTGGAAGAGAGGCTTCTTCATGAGCGTGAACAACAGCAAGAAGTTGAACTGAGCAAACAGAGGCATGAGGGAGATCTCAAGGAGAAGGAGAGGCTTGTTCGAATGATGGGCAATAAGGAGATATATCAGGTCCGAGTTGTTAGTCATCGCCAAGCAGAGTTTAATAGATTAAGAAGAGAACGGGAAGAGAGAATCTCTAGGATTTTGCAGTCAAGGAAACAGGAAAGGGAAAAGATGAGGAAGTTGAAGTATTATCTCAAATTAGAAGAAGAGAGACAACAAAAGATGCGTGAGGAGGAGGAAGCACGGAAACGTGAAGAGGCGGAAAGGAGAAAGAAGGAAGAGGCTGAACGTTTAGCGAAACTGGCCGAGATAGCTGAAAAACAGAGGCAGAGAGAGCGGGAACTCGAAGAAAAAGAGAGACAAAGGAAAGAAGCATTGTTAGGCAGAGCTGTTGAACCAGCTCCTCCTGCGCGCCAATCGGAACCCGTAACAGCTCCTGCTGCGGCAGCTGCAGCTGCTGCAGCTCCAAACCCAGGGAAATACGTGCCTAAGTTCATGCGAGATAGAGCTGAAAGAACAGGCACTGCTCCTCCTCCGGAAACAGATCGCTGGAGTAACAGTAGCAGCAGGCCAGATGGTGACAGGAGGCCGGATGGTGACAGGTGGCGTGGTGATGATCGGCGAAGTAGTTATGTTAGTGGTGGAGGTTCAAGGTCATCATCTTCTTGGTCCAGGAATCCGCGTTGA 2883 0.436 MTSFLKPENALKRAEELINVGQKQDALQTLHDLITSKRYRAWQKTLERIMFKYVELCVDMRKGRFAKDGLIQYRIICQQVNVSSLEEVIKHFMHLSTEKAEQARSQAQALEEALDVDDLEADKRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAHRAFQFCKQYKRTTEFRRLCEIIRNHLANLNKYRDQRDRPDLSAPESLQLYLDTRVEQLKIATELELWQEAFRSVEDIHGLMCLVKKTPKPSLMVVYYVKLTEIFWISSSHLYHAYAWFRLFLLQKSFNKNLSQKDLQLIASSVVLAALSVPPHDRTHGASHLELEHEKERNLRMANLIGFNLESKPESREMLSRSSLLAELASKGVMSCVTQEVKDVYHLLEHEFHPSDLALKALPLITKISKLGGKLSTASSVPEVQLSQYVPSLERLATMRLLQQVSNVYQTMKIETLSGMIPFFDFSVVEKIAVDAVKQKFVSMKVDHMKNVVIFCKTSLESDGLRDHLANFAEQLNKARQMIYPPDRKPSKLGALLPTLTEVVAKEHKRLLARKSIIEKRKEEQERQLLEMEREEESKRLRLQKITEEAEQRRLATEYEQRKNQRILREIEEREIEEAQALLQEAEKRIKKKGKKPIIEGDKMTKQTLMELTLTEQLRERQEMEKKLQKLAKTMDYLERAKREEAAPLIEAAYQQRLVEERLLHEREQQQEVELSKQRHEGDLKEKERLVRMMGNKEIYQVRVVSHRQAEFNRLRREREERISRILQSRKQEREKMRKLKYYLKLEEERQQKMREEEEARKREEAERRKKEEAERLAKLAEIAEKQRQRERELEEKERQRKEALLGRAVEPAPPARQSEPVTAPAAAAAAAAAPNPGKYVPKFMRDRAERTGTAPPPETDRWSNSSSRPDGDRRPDGDRWRGDDRRSSYVSGGGSRSSSSWSRNPR 960
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1264g00027 960 Coils Coil 615 649 - -
Vium1264g00027 960 MobiDBLite consensus disorder prediction 804 859 - -
Vium1264g00027 960 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 441 532 IPR000717 -
Vium1264g00027 960 Coils Coil 796 857 - -
Vium1264g00027 960 MobiDBLite consensus disorder prediction 804 960 - -
Vium1264g00027 960 Gene3D UVR domain 217 268 - -
Vium1264g00027 960 ProSiteProfiles PCI domain profile. 316 513 IPR000717 -
Vium1264g00027 960 FunFam Eukaryotic translation initiation factor 3 subunit A 217 268 - -
Vium1264g00027 960 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3, THETA SUBUNIT 1 954 IPR027512 GO:0005852
Vium1264g00027 960 FunFam Eukaryotic translation initiation factor 3 subunit A 268 342 - -
Vium1264g00027 960 MobiDBLite consensus disorder prediction 944 960 - -
Vium1264g00027 960 FunFam Eukaryotic translation initiation factor 3 subunit A 352 494 - -
Vium1264g00027 960 Gene3D - 269 342 - -
Vium1264g00027 960 Gene3D - 352 510 - -
Vium1264g00027 960 Pfam PCI domain 373 508 IPR000717 -
Vium1264g00027 960 Coils Coil 561 602 - -
Vium1264g00027 960 Coils Coil 667 697 - -
Vium1264g00027 960 Coils Coil 93 120 - -
Vium1264g00027 960 Hamap Eukaryotic translation initiation factor 3 subunit A [EIF3A]. 1 930 IPR027512 GO:0005852
Vium1264g00027 960 MobiDBLite consensus disorder prediction 919 940 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1264g00027 Vium-Chr1264 241601 248273 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1264g00027 1 960 Eukaryotic Initiation Factors Gene Family AT4G11420 73.203 0.0 1337
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1264g00027 K03254 - gmx:100782598 1451.8