LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium1264g00020	ATGGCTTCGCGGCGCCTCCGGGACCTCCAATCCCAAGCGGCGAACAAGATCTGCGTAGACTGTTCGCAGAAGAATCCGCAATGGGCTTCGGTGTCTTACGGAGTATTTATGTGCTTAGAGTGCTCCGGCAAGCACCGCGGCCTCGGGGTTCACATCTCCTTCGTGCGATCCGTTACCATGGATTCATGGTCCGAAATCCAGATCAAGAAGATGGAAGCTGGAGGCAACGACAAACTCAATGCCTTCCTCGCGCAATACGGCATCGCCAAGGAAACCGACATCGTCGCCAAGTACAATTCCAACGCCGCCTCCGTCTACCGCGACCGCATCCAGGCCATCGCCGATGGTCGCCCCTGGCGGGATCCCCCCGTCGTCAAGGAGAGCATCCGCTCCTCCGTCTCCAAGGGGAAGCCGCCCCTTGCCACCGGCAACAACGGCGGCTGGGATAATTGGGACACGGACGAGTTCGGATCGGCTCGGGGCGGCTCTGATCTGCGGCGGAACCAGTCCACTGGCGATGTCAGGGGGTTCGGCGGCGGCGGGAGCGTGGCGAGGTCGAAGTCGACGGAGGATATGTACACGCGCGCACAGCTGGAAGCCTCTGCTGCCAATAAGGAAGATTTCTTCGCGAGGAAGAGGGCGGAGAATGAGTCGCGACCGGAGGGGCTTCCGCCATCGCAGGGTGGCAAGTACGTCGGGTTCGGATCTAGTCCCGCCCCGAGCCAAAGGGCTAATCAGCAAAGCGATTATTTATCTGTCGTTTCTCAGGGATTCGGTAAATTATCGTTGGTTGCTGCTTCTGCGGCTCAGTCTGCTGCCAATGTTGTTCAGGCCGGGACAAAAGAGATCTCTGCTAAGGTAAAAGAGGGTGGTTATGATTACAAGGTCAATGAAACTGTAAATGTTGTCTCTCAGAAGACATCAGAGATTGGACACAGGACATGGGGTATAATGAGAGGGGTCATGGCAATGGCTACGCAAAAGGTTGAGGAATACACTAGAGATAGCCCCAATTCGACATCTGAAAAACAAAATGAAACTGATAAAAACGGTTTCTATCAGGAGTATAATCGAGAGAACAAAGGCTGGAATTCTTCTTCCAGAGAAGGGCAACAGTCTACGGGTGGACAAAATAATTCTTATCATTCAAGCTCTTGGGATGATTGGGGCCACAAAGATTCTAGGAAGGAACATCCTGCTAAAGGATCGCCTCATCAGTCATCAGGTGGGCTATCTGATGCTTATAACTCTAGCTCTTGGGATGATTGGGACCATGAAGACGCAAGGAAGAAAGAAGCAGCTAAAGGATCAGCTTCCCATAGCAGTGATGGTTGGGCTGGTTGGGATAATGCCAAAGATGATGGATTTGATGATTTCTATGGGAATGCATCTAATAATAAAGCTGCTGGTCATAATGATAAGGCGGGTGTTGCCTGGACAGGAGGAGGTTTTCACTAA	1458	0.5261	MASRRLRDLQSQAANKICVDCSQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNDKLNAFLAQYGIAKETDIVAKYNSNAASVYRDRIQAIADGRPWRDPPVVKESIRSSVSKGKPPLATGNNGGWDNWDTDEFGSARGGSDLRRNQSTGDVRGFGGGGSVARSKSTEDMYTRAQLEASAANKEDFFARKRAENESRPEGLPPSQGGKYVGFGSSPAPSQRANQQSDYLSVVSQGFGKLSLVAASAAQSAANVVQAGTKEISAKVKEGGYDYKVNETVNVVSQKTSEIGHRTWGIMRGVMAMATQKVEEYTRDSPNSTSEKQNETDKNGFYQEYNRENKGWNSSSREGQQSTGGQNNSYHSSSWDDWGHKDSRKEHPAKGSPHQSSGGLSDAYNSSSWDDWDHEDARKKEAAKGSASHSSDGWAGWDNAKDDGFDDFYGNASNNKAAGHNDKAGVAWTGGGFH	485

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium1264g00020	485	Pfam	Putative GTPase activating protein for Arf	4	102	IPR001164	GO:0005096
	Vium1264g00020	485	SUPERFAMILY	ArfGap/RecO-like zinc finger	3	109	IPR037278	-
	Vium1264g00020	485	MobiDBLite	consensus disorder prediction	331	485	-	-
	Vium1264g00020	485	MobiDBLite	consensus disorder prediction	356	385	-	-
	Vium1264g00020	485	MobiDBLite	consensus disorder prediction	331	347	-	-
	Vium1264g00020	485	ProSiteProfiles	ARF GTPase-activating proteins domain profile.	3	109	IPR001164	GO:0005096
	Vium1264g00020	485	MobiDBLite	consensus disorder prediction	419	437	-	-
	Vium1264g00020	485	PANTHER	ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED	2	408	IPR044519	GO:0005096\|GO:0016192
	Vium1264g00020	485	CDD	ArfGap_ArfGap1	2	116	-	-
	Vium1264g00020	485	MobiDBLite	consensus disorder prediction	213	247	-	-
	Vium1264g00020	485	PRINTS	HIV Rev interacting protein signature	55	76	IPR001164	GO:0005096
	Vium1264g00020	485	PRINTS	HIV Rev interacting protein signature	15	34	IPR001164	GO:0005096
	Vium1264g00020	485	PRINTS	HIV Rev interacting protein signature	34	51	IPR001164	GO:0005096
	Vium1264g00020	485	SMART	arf_gap_3	3	119	IPR001164	GO:0005096
	Vium1264g00020	485	FunFam	ADP-ribosylation factor GTPase-activating protein	1	128	-	-
	Vium1264g00020	485	MobiDBLite	consensus disorder prediction	129	191	-	-
	Vium1264g00020	485	MobiDBLite	consensus disorder prediction	386	402	-	-
	Vium1264g00020	485	Gene3D	Arf GTPase activating protein	1	125	IPR038508	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium1264g00020	Vium-Chr1264	191488	196309	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium1264g00020	4	82	C2H2 Transcription Factor Family	AT4G21160	51.250	7.40e-22	94.7

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium1264g00020	K12492		-	gmx:100801306	816.994