Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1264g00008 ATGGACGACAATAACCAATACCCCATTCTCACGCCTTCAGGATTACCTCGCCAAAACAAACCCTCTATTGCAGAGGACGACGTCATGGAGCTGCTATGGCATGACGGCCAGGTTGTGATGCAGAGTCAGAACCACCGTTCTCTAAGAAAACCGATGCCGCCGCCCAGAAACTCCCACGATGCCTCCGCCGCCGGTCCCTCCGAGGACAGGGAGATTCGACCGCAGCTCGACAATTTCAATCAACATCTCTTCATGCAAGAAGGCGAAATGGCTTCCTGGCTACACTATCCAATCGACGTCGACGACGTACCTCCGTTGGATCAGGCTTTCTGCGCCGATTTCCTCTACTCACCGCCCACCGTTAACAACAGCACCGCCATGCAAACTCTCGCCACGTCTCAGCTTACAGACCACCGCCCCATGTCCGCACCGCCTCGACCTCCAATTCCGCTGCCGAGACGGCTGGAACCGAAGACGCCGAACTTCGCGTACTTCGCGCGGCACAACACGAGAGCCGCCGAGGAGAGCGTGAAGGCAGCCGCGAAGGAATCCACAGTGGTGGATTCTTGCGAGACGCCGGCCGCAACGGCAGCGGCGGTTTCGAGAGTTTCGGAAACTTTGAGGAACGCGGCGGAACCGACGGAAGGAGGCGCCGGCGGTCCGGTGCCTTCAACGAGTGCCGGTGACGGAAGGAGCACGATGATGTGCGACGTGACTATGGCATCGTCGCCGGGCAGTTCGAGTACTAGCGGCGAGCCAGTTCAGGTGGCGCAGGCGGAAGAGCGGAAGCGGAAGGGTCGGGAGGCGGAGGAATGGGATTCTCAGAGCGAGGATGTTGATTTTGAATCGGAAGCAAAGAAACAAGCTCGAGGATCAACATCTACAAAGAGATCACGTGCAGCGGAGGTCCATAATCTCTCTGAGAGGAGGCGTCGTGATCGGATTAATGAAAAGATGAGAGCTCTGCAAGAACTTATACCTCGATGTAATAAGTCGGACAAAGCTTCAATGTTGGATGAAGCAATTTCGTACTTGAAATCATTGCAGTTACAAGTGCAGATGATGTCCATGGGATGTGGCATGGTACCTATGATGTTTCCTGGAATCCAGCAGTACATGCCAGCAATGGGGATGGGGGTTGGAATGGGTATGGGAATGGAAATGGGAATGAACAGACCTGTGATGCCGTTTCCCAATATGTTACCTGGTTCTGCTTTGCCAGCAGCAACAGCAGCGGCTCATTTGGGACCAAGGTTTCCAATGCCTCCTTTCCACATGCCGCGTGTTCCTGCTCCCGATTCTTCCAGAATGCAAGCAGAAAATCAGTCAGATAAAAATATGGTTGCAGCTGGTCCACTTGATCCAAACCACTCACGTCTCCCAAACTTCACGGATCCTTATCAACAATATCTTGGTCCCCACCAGATGCAGTTTCAAGTAATTCAGAATCAGGCAATGAACCAACCAAATGTTGGCAAGCCCAGTACCAGTAGGGATAATCCAGAAAGCCGTTAG 1515 0.536 MDDNNQYPILTPSGLPRQNKPSIAEDDVMELLWHDGQVVMQSQNHRSLRKPMPPPRNSHDASAAGPSEDREIRPQLDNFNQHLFMQEGEMASWLHYPIDVDDVPPLDQAFCADFLYSPPTVNNSTAMQTLATSQLTDHRPMSAPPRPPIPLPRRLEPKTPNFAYFARHNTRAAEESVKAAAKESTVVDSCETPAATAAAVSRVSETLRNAAEPTEGGAGGPVPSTSAGDGRSTMMCDVTMASSPGSSSTSGEPVQVAQAEERKRKGREAEEWDSQSEDVDFESEAKKQARGSTSTKRSRAAEVHNLSERRRRDRINEKMRALQELIPRCNKSDKASMLDEAISYLKSLQLQVQMMSMGCGMVPMMFPGIQQYMPAMGMGVGMGMGMEMGMNRPVMPFPNMLPGSALPAATAAAHLGPRFPMPPFHMPRVPAPDSSRMQAENQSDKNMVAAGPLDPNHSRLPNFTDPYQQYLGPHQMQFQVIQNQAMNQPNVGKPSTSRDNPESR 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1264g00008 504 Gene3D - 294 357 IPR036638 GO:0046983
Vium1264g00008 504 MobiDBLite consensus disorder prediction 136 156 - -
Vium1264g00008 504 FunFam Basic helix-loop-helix transcription factor 294 357 - -
Vium1264g00008 504 MobiDBLite consensus disorder prediction 1 22 - -
Vium1264g00008 504 SMART finulus 305 354 IPR011598 GO:0046983
Vium1264g00008 504 MobiDBLite consensus disorder prediction 141 155 - -
Vium1264g00008 504 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 297 365 IPR036638 GO:0046983
Vium1264g00008 504 MobiDBLite consensus disorder prediction 226 255 - -
Vium1264g00008 504 MobiDBLite consensus disorder prediction 474 504 - -
Vium1264g00008 504 Pfam Helix-loop-helix DNA-binding domain 303 349 IPR011598 GO:0046983
Vium1264g00008 504 MobiDBLite consensus disorder prediction 474 498 - -
Vium1264g00008 504 MobiDBLite consensus disorder prediction 209 307 - -
Vium1264g00008 504 PANTHER TRANSCRIPTION FACTOR PIF3 18 127 IPR044273 GO:0003700|GO:0006355
Vium1264g00008 504 MobiDBLite consensus disorder prediction 431 451 - -
Vium1264g00008 504 CDD bHLH_AtPIF_like 299 362 IPR047265 -
Vium1264g00008 504 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 299 348 IPR011598 GO:0046983
Vium1264g00008 504 MobiDBLite consensus disorder prediction 1 18 - -
Vium1264g00008 504 MobiDBLite consensus disorder prediction 257 272 - -
Vium1264g00008 504 MobiDBLite consensus disorder prediction 41 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1264g00008 Vium-Chr1264 84627 90087 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1264g00008 15 354 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G20180 43.503 1.31e-65 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium1264g00008 HLH 6.1e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1264g00008 - - gmx:100797225 715.301