Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1264g00006 ATGGCACGTAGAAACTTTGGAAGCCAGATAACAGCACTTGTTGTAGATGACAATGTACTGAACAGAAGGATTCATGAAAAGCTGTTGGAGAGTGCTGGAGTGAGAAATCACGAGGGAGTGGAAAATGGGAAAGTAGCAGTGGATATTCATTGCCATGGACGAAGATTCGACCTCATTCTCATGGACATGGACATGCCAATAATGAATGGCATTCAGGCAACAAAGGAACTTCGTTCCATGGGCATTGGGAGCATGATCGTTGGTGTGTCATCACGTTGTACGGAAACAGAAATACGAAAATTTATGGAATCAGGATTGAATGACTACCATGAGAAACCATTGAACACTGCAAAGCTTAATTCAATTCTTGATAAGATGAACCCTAATTTTACTAATAAATGA 402 0.4055 MARRNFGSQITALVVDDNVLNRRIHEKLLESAGVRNHEGVENGKVAVDIHCHGRRFDLILMDMDMPIMNGIQATKELRSMGIGSMIVGVSSRCTETEIRKFMESGLNDYHEKPLNTAKLNSILDKMNPNFTNK 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1264g00006 133 ProSiteProfiles Response regulatory domain profile. 11 127 IPR001789 GO:0000160
Vium1264g00006 133 PANTHER TWO-COMPONENT RESPONSE REGULATOR 11 129 - -
Vium1264g00006 133 SMART REC_2 10 123 IPR001789 GO:0000160
Vium1264g00006 133 CDD REC_hyHK_CKI1_RcsC-like 13 123 - -
Vium1264g00006 133 Pfam Response regulator receiver domain 13 123 IPR001789 GO:0000160
Vium1264g00006 133 SUPERFAMILY CheY-like 8 126 IPR011006 -
Vium1264g00006 133 Gene3D - 2 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1264g00006 Vium-Chr1264 67515 68045 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1264g00006 10 123 Response Regulator Gene Family AT3G04280 47.414 1.05e-26 95.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vium1264g00006 Response_reg 2e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1264g00006 - - gmx:100794931 211.075