Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12633g00001 ATGAAGGATGGTGGAAGAAAACAAGGTGCAATGTCACCATGTGCAGCATGCAAGCTTCTTCGAAGGAGATGTGCAGAGGATTGTGTGTTTGCTCCTTATTTTCCTGCAGATGAGCCACACAAGTTTGCCAGTGTGCACAAGGTTTTTGGAGCTAGCAATGTCAACAAAATGTTACAGGAACTACCGGAGTACCAACGAAGTGATGCTGTTAGTTCAATGGTATACGAAGCCAATGCAAGGGTGAGAGATCCCGTGTATGGATGTGTGGGAGCCATATCTTCTCTGCAGCAACAAGTTGATGTTTTACAAACCCAGTTGGCACTTGCACAAGCAGAGGTTGTGCACATGAAACTGAGCCAAGTTTCAACTTCCTCTGAACAACTCAAAGCAGTGCCTGCAACATCCAATTCATCCTCAGAGAACTTATCTCCATCAAGTAAACTTGCCAAAACCCTTTTTGCTATGGACATGGTCGTTGATCAGCCAAACATGGGAGTGTCTCTGTGGTCATGTTAG 516 0.4516 MKDGGRKQGAMSPCAACKLLRRRCAEDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQELPEYQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQVDVLQTQLALAQAEVVHMKLSQVSTSSEQLKAVPATSNSSSENLSPSSKLAKTLFAMDMVVDQPNMGVSLWSC 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12633g00001 171 Coils Coil 92 112 - -
Vium12633g00001 171 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 11 139 - -
Vium12633g00001 171 Pfam Lateral organ boundaries (LOB) domain 13 110 IPR004883 -
Vium12633g00001 171 ProSiteProfiles LOB domain profile. 12 113 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12633g00001 Vium-Chr12633 5772 10018 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12633g00001 1 171 AS2 family AT1G31320 66.092 2.57e-71 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vium12633g00001 LOB 3.3e-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12633g00001 - - ccaj:109811748 266.159