Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12631g00002 ATGGAGAACCGACACCACCGTGAATTGACCTTTTTAAGCTCCGGCGGCGACTTCCTCAATCCCCCTTTCGATCACACAACCCGCGACACCGATCCTCCCATCAAAGAAATGGACTTCTTCTCATCATCACCTTCATCTCCGGCTACTCATAAAACCAACAACACCAATCATATCAACCATGTTGGACTTCAAGATCACACTCATCCACAAGGATCACCCCCACACGTCTCTCATCACCCTGTAAACACCGGACTGAATTTAACTTGTGCAAGTACTGGACTCACAAAAGAAGAAAATGGTGAAAATCATGAAGCTGAGCTGAGTTCCATTGAAAGTCAATTGCGGAGACTACAGGAAGAGAATCGTAAGTTGAGAACTGTGCTGGACCAGATTACTAGAAGCTACACCCAACTCCAAGCTCAGTTATTCATCACTCTGCAGAAACAAAAGCTTCCTCAGAATACGGAGGCAAATGGGATGGTGTCGGAACAAAAAAATGTGGACCCAGCTGGAGTATGCAGGAAGTTAGAGGTGGTAAATGAAGCATCGGTTTGTGATGAAAAGACTGATGGTGAGGTATCGGTTTGCCGCTCAAACAACGTTGAGGTATTGTCAAAGACAGATGATGATGAGGCTCCTCAATTCATTAAACTGAACCTTGGAAAACAGGCTTGTCCCGATGCTTCAGAAGATGTTCTTGACCGGTCCTCCTCACAGAGCTGGGGCTCATCCAAGTTAGAAGAACAACCCAAAACTGCAGAACAAGTTTCTGCAGATCAGATTCCTCTCAGGAAAGCCAGGGTTTCCGTACGAGCTAGATCAGAAGCTCCACTGATCAGTGATGGTTGTCAGTGGAGGAAATATGGACAGAAAATGGCAAAGGGTAACCCTTGCCCTCGTGCTTACTATCGCTGTACTATGGCTGTAGGATGCCCAGTGCGCAAACAGGTGCAGAGATGCGTAGAAGACAAGACCGTGTTGATAACAACCTACGAAGGCAATCACAATCACCCTCTGCCACCAGCTGCCACTGCCATGGCAAGTACCACATCAGCAGCCGCCGCCATGCTCTTGTCAGGTTCAACAGCCAGCAAAGAAGCACTCACAAACTCTGCTGGATATTACTCTTCGCTTCCCTACGCTTCAATGGCAACCCTATCCGCTTCAGCACCATTCCCGACCATTACTCTCGACTTGACCCAAAACCCCAACGCCATGCACCTCCACCGCGTACCACCCCATGCTACTACGTTCCCTCTCCCACTGCATGCTTCCGGTGGTCACCAACTTCTAGGCCACCCCTTGTTCTTCTCACAGAAGCTTCCACCTGCAGCATCGCCCCTACTTCATGCTCGACAAACTTCATCTATGGTCGAAACGGTTAGTGCAGCCATTGCTTCCGATCCAAACTTCACTTCAGCTTTGGCAGCAGCAATCTCCTCAATCATTGGAATACCTAGTAACAACAACGGAACTACTGGTGCCATTGGGTCACCGCAGCTTCCTCAGTCATGCACTACTTTCTCCACCAACTAG 1536 0.487 MENRHHRELTFLSSGGDFLNPPFDHTTRDTDPPIKEMDFFSSSPSSPATHKTNNTNHINHVGLQDHTHPQGSPPHVSHHPVNTGLNLTCASTGLTKEENGENHEAELSSIESQLRRLQEENRKLRTVLDQITRSYTQLQAQLFITLQKQKLPQNTEANGMVSEQKNVDPAGVCRKLEVVNEASVCDEKTDGEVSVCRSNNVEVLSKTDDDEAPQFIKLNLGKQACPDASEDVLDRSSSQSWGSSKLEEQPKTAEQVSADQIPLRKARVSVRARSEAPLISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCVEDKTVLITTYEGNHNHPLPPAATAMASTTSAAAAMLLSGSTASKEALTNSAGYYSSLPYASMATLSASAPFPTITLDLTQNPNAMHLHRVPPHATTFPLPLHASGGHQLLGHPLFFSQKLPPAASPLLHARQTSSMVETVSAAIASDPNFTSALAAAISSIIGIPSNNNGTTGAIGSPQLPQSCTTFSTN 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12631g00002 511 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 96 487 IPR044810 GO:0003700
Vium12631g00002 511 SUPERFAMILY WRKY DNA-binding domain 272 340 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium12631g00002 511 Gene3D WRKY domain 264 341 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium12631g00002 511 ProSiteProfiles WRKY domain profile. 274 340 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium12631g00002 511 MobiDBLite consensus disorder prediction 232 256 - -
Vium12631g00002 511 Pfam WRKY DNA -binding domain 281 338 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium12631g00002 511 MobiDBLite consensus disorder prediction 39 66 - -
Vium12631g00002 511 MobiDBLite consensus disorder prediction 229 259 - -
Vium12631g00002 511 MobiDBLite consensus disorder prediction 1 78 - -
Vium12631g00002 511 Coils Coil 100 141 - -
Vium12631g00002 511 SMART WRKY_cls 279 339 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium12631g00002 511 FunFam probable WRKY transcription factor 31 264 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12631g00002 Vium-Chr12631 7698 12883 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12631g00002 93 483 WRKY Transcription Factor Family AT4G04450 43.855 1.82e-84 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vium12631g00002 WRKY 1.2e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12631g00002 - - gmx:100783661 655.981