Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12631g00001 ATGGAGAACCGACACCACCGTGAATTGACCTTTTTAAGCTCCGGCGGCGACTTCCTCAATCCCCCTTTCGATCACACAACCCGCGACACCGATCCTCCCATCAAAGAAATGGACTTCTTCTCATCATCACCTTCATCTCCGGCTACTCATAAAACCAACAACACCAATCATATCAACCATGTTGGACTTCAAGATCACACTCATCCACAAGGATCACCCCCACACGTCTCTCATCACCCTGTAAACACCGGACTGAATTTAACTTGTGCAAGTACTGGACTCACAAAAGAAGAAAATGGTGAAAATCATGAAGCTGAGCTGAGTTCCATTGAAAGTCAATTGCGGAGACTACAGGAAGAGAATCGTAAGTTGAGAACTGTGCTGGACCAGATTACTAGAAGCTACACCCAACTCCAAGCTCAGTTATTCATCACTCTGCAGAAACAAAAGCTTCCTCAGAATACGGAGGCAAATGGGATGGTGTCGGAACAAAAAAATGTGGACCCAGCTGGAGTATGCAGGAAGTTAGAGGTGGTAAATGAAGCATCGGTTTGTGATGAAAAGACTGATGGTGAGGTATCGGTTTGCCGCTCAAACAACGTTGAGGTATTGTCAAAGACAGATGATGATGAGGCTCCTCAATTCATTAAACTGAACCTTGGAAAACAGGCTTGTCCCGATGCTTCAGAAGATGTTCTTGACCGGTCCTCCTCACAGAGCTGGGGCTCATCCAAGTTAGAAGAACAACCCAAAACTGCAGAACAAGTTTCTGCAGATCAGATTCCTCTCAGGAAAGCCAGGGTTTCCGTACGAGCTAGATCAGAAGCTCCACTGATCAGTGATGGTTGTCAGTGGAGGAAATATGGACAGAAAATGGCAAAGGGTAACCCTTGCCCTCGTGCTTACTATCGCTGTACTATGGCTGTAGGATGCCCAGTGCGCAAACAGAGATGCGTAGAAGACAAGACCGTGTTGATAACAACCTACGAAGGCAATCACAATCACCCTCTGCCACCAGCTGCCACTGCCATGGCAAGTACCACATCAGCAGCCGCCGCCATGCTCTTGTCAGGTTCAACAGCCAGCAAAGAAGCACTCACAAACTCTGCTGGATATTACTCTTCGCTTCCCTACGCTTCAATGGCAACCCTATCCGCTTCAGCACCATTCCCGACCATTACTCTCGACTTGACCCAAAACCCCAACGCCATGCACCTCCACCGCGTACCACCCCATGCTACTACGTTCCCTCTCCCACTGCATGCTTCCGGTGGTCACCAACTTCTAGGCCACCCCTTGTTCTTCTCACAGAAGCTTCCACCTGCAGCATCGCCCCTACTTCATGCTCGACAAACTTCATCTATGGTCGAAACGGTTAGTGCAGCCATTGCTTCCGATCCAAACTTCACTTCAGCTTTGGCAGCAGCAATCTCCTCAATCATTGGAATACCTAGTAACAACAACGGAACTACTGGTGCCATTGGGTCACCGCAGCTTCCTCAGTCATGCACTACTTTCTCCACCAACTAG 1530 0.4863 MENRHHRELTFLSSGGDFLNPPFDHTTRDTDPPIKEMDFFSSSPSSPATHKTNNTNHINHVGLQDHTHPQGSPPHVSHHPVNTGLNLTCASTGLTKEENGENHEAELSSIESQLRRLQEENRKLRTVLDQITRSYTQLQAQLFITLQKQKLPQNTEANGMVSEQKNVDPAGVCRKLEVVNEASVCDEKTDGEVSVCRSNNVEVLSKTDDDEAPQFIKLNLGKQACPDASEDVLDRSSSQSWGSSKLEEQPKTAEQVSADQIPLRKARVSVRARSEAPLISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQRCVEDKTVLITTYEGNHNHPLPPAATAMASTTSAAAAMLLSGSTASKEALTNSAGYYSSLPYASMATLSASAPFPTITLDLTQNPNAMHLHRVPPHATTFPLPLHASGGHQLLGHPLFFSQKLPPAASPLLHARQTSSMVETVSAAIASDPNFTSALAAAISSIIGIPSNNNGTTGAIGSPQLPQSCTTFSTN 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12631g00001 509 Gene3D WRKY domain 264 339 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium12631g00001 509 Pfam WRKY DNA -binding domain 281 336 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium12631g00001 509 FunFam probable WRKY transcription factor 31 264 339 - -
Vium12631g00001 509 SMART WRKY_cls 279 337 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium12631g00001 509 ProSiteProfiles WRKY domain profile. 274 338 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium12631g00001 509 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 96 485 IPR044810 GO:0003700
Vium12631g00001 509 MobiDBLite consensus disorder prediction 232 256 - -
Vium12631g00001 509 SUPERFAMILY WRKY DNA-binding domain 272 338 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium12631g00001 509 MobiDBLite consensus disorder prediction 229 259 - -
Vium12631g00001 509 MobiDBLite consensus disorder prediction 39 66 - -
Vium12631g00001 509 MobiDBLite consensus disorder prediction 1 78 - -
Vium12631g00001 509 Coils Coil 100 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12631g00001 Vium-Chr12631 7698 12885 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12631g00001 93 481 WRKY Transcription Factor Family AT4G04450 43.373 4.43e-81 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vium12631g00001 WRKY 6e-20 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12631g00001 - - gmx:100783661 647.506