Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1262g00030 ATGGCAGCGTGCATAATCACGGTTTCACAGGACGGAACCGCTGATTTCCTAACGGTGCAGGCGGCGATCGACGCCGTGCCGCTTGGCAACATTCGCCGGACGGTGATTCGGGTCTCGCCGGGAATCTACCGGCAGCCGGTGTACATCCCCAAGACCAAGAATTTCATCACTCTCGCTGCTCTGTCCCCTGAGGACACTGTGCTTACCTGGAACAACACTGTCTCCGGAATCAATCACCATCAACCTGCGAGGATAATAGGGACTGGGACCTTCGGTTGTGGAAGTACCATTGTGGAAGGGGAGGACTTTATTGCCGAGAATATTACTTTTGAGAATTCTGCCCCTCAGGGTTCAGGTCAAGCAGTTGCAATTAGAGTAACAGTGGATCGATGTGCCTTCTACAATTGTAGGTTCCTTGGATGGCAGGACACATTGTACTTACATTACGGTAAACAATATTTGAAAGATTGTTACATTGAAGGAAGTGTGGACTTCATCTTTGGCAATGGCACTGCACTTTTGGAGCATTGTCATATCCACTGCAAGTCTGAGGGCTTCATAACTGCACAGAGCAGAAAATCATCACAGGAAACAACTGGTTATGTATTCTTAAGATGCATTATCACGGGTAATGGAGGAAAATCGTATGCATATCTTGGACGACCGTGGGGCCCTTTTGGAAGGGTGGTCTTTGCATACACTTACATGGATCAGTGTATAAGACATGTTGGCTGGGATAACTGGGGGAACATGGAGAACGAGAGAAGTGCTTGCTTTTATGAATACAGGTGTTTTGGACCTGGTTGCTGTCCATCGAAGCGAGTAACATGGTGTAGAGAATTGTTGGATGAAGAAGCTATGCAGTTCGTCACTCATCCTTTCATCGATCCAGAACCAGAGAAACCTTGGCTTGCTCAAAGGATGGCCCTCAGAATTCCGTATTCTGCATGA 951 0.4763 MAACIITVSQDGTADFLTVQAAIDAVPLGNIRRTVIRVSPGIYRQPVYIPKTKNFITLAALSPEDTVLTWNNTVSGINHHQPARIIGTGTFGCGSTIVEGEDFIAENITFENSAPQGSGQAVAIRVTVDRCAFYNCRFLGWQDTLYLHYGKQYLKDCYIEGSVDFIFGNGTALLEHCHIHCKSEGFITAQSRKSSQETTGYVFLRCIITGNGGKSYAYLGRPWGPFGRVVFAYTYMDQCIRHVGWDNWGNMENERSACFYEYRCFGPGCCPSKRVTWCRELLDEEAMQFVTHPFIDPEPEKPWLAQRMALRIPYSA 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1262g00030 316 Gene3D - 4 311 IPR012334 -
Vium1262g00030 316 FunFam Pectinesterase 2 309 - -
Vium1262g00030 316 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 5 298 - -
Vium1262g00030 316 Pfam Pectinesterase 6 296 IPR000070 GO:0030599|GO:0042545
Vium1262g00030 316 ProSitePatterns Pectinesterase signature 2. 159 168 IPR033131 -
Vium1262g00030 316 SUPERFAMILY Pectin lyase-like 2 298 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1262g00030 Vium-Chr1262 143030 146426 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1262g00030 5 309 Carbohydrate Esterase AT5G47500 38.924 2.23e-70 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1262g00030 K01051 - gmx:100786786 641.343