Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1262g00027 ATGGCAAGGAAGAGAAAGGCTTCTGAAGAAGTTAAAGAGAGAAATTTATCTGATGAAACCATGGCATGGGATGAGGTGATGAAGGAAGCTGCTGCACTAGGAAGTGGCTGGAAATTGAGGAAGAGATTTGTTGGTGTGAGACAAAGGCCTTCAGGAAGATGGGTGGCTGAGATAAAGGATACAATTCAGAAGATAAGAGTGTGGTTAGGAACCTTTGATACAGCTGAGGAAGCTGCAAGAGCCTATGATGAGGCTGCATGTCTTCTTCGAGGTGCCAACACTAGAACAAACTTCTGGCCCAGTTATCAATCTTCCTCAACTCCTGCTCTTCCCTCAAAGATTACCAATCTCCTCCTTCAAAGGCTCAAAGCAAGGAATGACACTAGCACAAAGCCTTGCACTGTTTCTTCATCTTCCTCCTCCACATCTCTTTTAATCAACCAGCAACAAAGCCAACAAGAAGATGTACGTGGAACTGAGTCAACATATTTCACATTGGACCAATTCTCAGATTTCCTTAATGACCCTGAAGATTACAGCACAAACAACAATGAGTTTAGTAATGACAGTGCACAAACGGATTGCATCACAAATAGTCTTGAATCATGTTTGAATGAGAATGATGATTGCAGGGAAAACGAAAAAGAAATGGTAATGGAATTTGACTTCAACAGTGTGACACAAACATCAAGTGCTGATGTAAATTCAGGAGGGGAAAGAGAGGAAGACAGTGAAGAAGGAACTGATTTGAGTGGTCAGGATTTTCAGTTCCTGGACAATGTTGTTCCATCTAGTTATCATTATTCACTTTTTGAGATCACTGAAGAGATTGAGGAGCAGCTGGAGGCTGAAAACTGTGGTGATGAGCCTTCAATGTTTAGAGAAGTCTTGAAGAGAATGAAATATGAGAGGAAGTTTTCAGCTTCCCTCTATGCCTTCAATGGAATACCTGAATGCTTGAAGTTGAAAGTTGAATCAGTAAACAAAAATAGAAGTGGGGTTTGTATTTCTAATGAACTAACCAACCTCAAGATGGCTTGCAGCAAAAACAAAATTGAGGCTATTGAGAAGAATGAAGAACACATAGAAGCGATGGATGGGAAAGAGCCACAAACATCAGTTGGCATGGATTGCTCTTCACCCTCTTTTTCATCCAGTATTGATGATGAACTGTTACTATGGAATGCACTTGATCTTCCTACTGTTTGTGGTGTTAACTAG 1221 0.4079 MARKRKASEEVKERNLSDETMAWDEVMKEAAALGSGWKLRKRFVGVRQRPSGRWVAEIKDTIQKIRVWLGTFDTAEEAARAYDEAACLLRGANTRTNFWPSYQSSSTPALPSKITNLLLQRLKARNDTSTKPCTVSSSSSSTSLLINQQQSQQEDVRGTESTYFTLDQFSDFLNDPEDYSTNNNEFSNDSAQTDCITNSLESCLNENDDCRENEKEMVMEFDFNSVTQTSSADVNSGGEREEDSEEGTDLSGQDFQFLDNVVPSSYHYSLFEITEEIEEQLEAENCGDEPSMFREVLKRMKYERKFSASLYAFNGIPECLKLKVESVNKNRSGVCISNELTNLKMACSKNKIEAIEKNEEHIEAMDGKEPQTSVGMDCSSPSFSSSIDDELLLWNALDLPTVCGVN 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1262g00027 406 FunFam ethylene-responsive transcription factor RAP2-11 41 100 - -
Vium1262g00027 406 MobiDBLite consensus disorder prediction 128 158 - -
Vium1262g00027 406 Pfam AP2 domain 42 91 IPR001471 GO:0003700|GO:0006355
Vium1262g00027 406 CDD AP2 41 98 IPR001471 GO:0003700|GO:0006355
Vium1262g00027 406 MobiDBLite consensus disorder prediction 228 251 - -
Vium1262g00027 406 Gene3D AP2/ERF domain 41 99 IPR036955 GO:0003700|GO:0006355
Vium1262g00027 406 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 25 307 - -
Vium1262g00027 406 SUPERFAMILY DNA-binding domain 42 100 IPR016177 GO:0003677
Vium1262g00027 406 PRINTS Ethylene responsive element binding protein signature 43 54 IPR001471 GO:0003700|GO:0006355
Vium1262g00027 406 PRINTS Ethylene responsive element binding protein signature 65 81 IPR001471 GO:0003700|GO:0006355
Vium1262g00027 406 ProSiteProfiles AP2/ERF domain profile. 42 99 IPR001471 GO:0003700|GO:0006355
Vium1262g00027 406 SMART rav1_2 42 105 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1262g00027 Vium-Chr1262 124810 126124 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1262g00027 40 118 AP2-EREBP Transcription Factor Family AT5G19790 73.418 1.67e-32 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vium1262g00027 AP2 7.9e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1262g00027 K09286 - gmx:100796159 589.726