Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1262g00017 ATGCGTTTGAATGGTGCTGTAAGGAGTTGGCATGTAGCCATCGTGCACCATGCCATTACAGCACACTCTCTTTTTCTCTTTCTCTTTGTACTTCTCTGTGTATCCAAACAAAGCGACAAACAAACAGAAAACAATAAGACATTATTCGAACCGTTACATTACACCTTTCTTTCTCTCTCTCTTTTCTTTCTTTCTCTTACATTTAGAACACCAAAAAGAGATATGCACCCTTGGGACCCGCGAATGTCTCACGACCGTTCGCGACATCCTCGAAAATCCTCCGCAGATCTCGCGACATACGGAGAGAAAGACGAGGGTTGGATATTGATTACTGGATTGTGTCATTTTCGGAAGAGAGAAAAAACCAAGCCCAAGGAGCGAGGCGTTTTCGCGACCCGTTTCCTAGCCGGGTCGGAGCCCCGGAAAATGGGTTGCGCGAGCTCGAGGCGGGCTCTTGCCGGAAGCGATTTCACGCCGCCGGGACTGCTATCGTTGCGATCGAGCTCGCGGAAAAGGTGCAATGGGAAGAGGCGAAACGGCGTCGTGGAGGCGCGTGAGGTAGACGCGGGAATGGAGGAGGAGAAGGAGTGGAAGAAGGGGAGCTTGAGAGGTCCGGTGTCGTTGAGGTTGTCGTGTAGGTTTGTGGAGGCTGAGCAGAATGCCGCTGGGTGGCCATCTTGGCTTACCTCTGTTGCAGGGGAAGCTATTCAAGGGTGGGTCCCTCTCAAAACCGATTCTTTTGAGAGATTGGATAAGATTGGACAAGGTACATATAGCAATGTATTCCAAGCACGTGAAATTGAAACTGGGAGGATGGTTGCCCTGAAGAAGGTACGATTTGACAAACTTAAAGATGATAGCATTAGGTTCATGGCAAGAGAAATAGCGATTCTTCGCTCACTTGACCACCCAAACATCATGAAATTGGATGGTATAATTACTTCACAACAATCAAACAACATATACCTTGTATTTGAATACATGGAGCATGACCTTGCTGGCCTAGTGGCTTCTCCTGATATAAAGTTCACTGAATCACAGATTAAGTGTTACATGAGACAGTTATTAAGTGGAATCGAGCATTGTCACCTTCGAGGTATCATGCATCGAGACATTAAAGTATCTAATATACTAGTGAACAATGAAGGTGTTCTCAAGATAGGAGATTTTGGATTAGCAAATACCCTTAGTCCTAATAGCAAGCAACCCTTAACAAGTCGAGTGGTGACTCTATGGTATCGTCCTCCTGAACTTTTAATGGGATCAACAGACTATGGTGTTTCGGTGGATCTATGGAGTGTTGGCTGTGTATTTGCTGAACTTTTTCTGGGGAAGCCCATCCTTAAGGGGAGAACTGAGGTGGAACAATTACACAGAATTTTCAAGCTTTGCGGGTCTCCACCTGAGGAATACTGGAAAAAGAGTAAGCTTCCTCTGGCCACAATGTTTAAGCCTCAGACTAATTACGAAGCCTCTCTTCAAGAGAGGTGTAAAGGTTTTCCTGTAACTGCTGTAAAACTACTTGAGACTTTACTTTCCATTGATCCCTCCAAGCGTGGGACTGCCTCCTCTGCACTCACGTCTGAGTATTTCAGCACCAAGCCATATGCCTGTGATCCATCACTCATGCCAAAGTATCCACCAAGCAAAGAAATGGATGCTAGAAATCGGGAAGAAGCGAGCAGGAAAAAGACTTTAGGTAAAGGGAGAGAGGCTGTGACTTCAAAAAGGAATAGACGAGTCCACAAAGTTTCCCATGACCATATAAATTTCAACAAACCAGCTTGGAAAGAGGAAATGCAGAATAGTTCTCAAAATATTGGCACAGGGGATGATGGTTGGGCACATGTTGCAAAAGTTAAAATAGGAGCTTTGCATAAAGAGCAACCAAAGGCTTCATGTGATGGAAAGTCTGAGGCTGCCCAAGTGGTGGATGGTTGCAATGGAAACAGTGTATACTCTGGACCAGCACCAGTCTCAGCATCCAGTGGTTTTACATGGGCTAAAAGGAGAAAACCAGAAGCTTCATCCATATTGTCTGATGGTTCAAGAAGCAAAATCAGTGCTCTGGATCCAATCTTTGTAAAAGGCAAATGTGATTTAACAAAACATGAGATAGAAGTTTCAGAAAGGAAACATGGTTTCAACACAAGACATCAGGACAGGATTTTCAGCCATGTATTACCAATATACCAGGCTCCTCGCTTTCAACAAAAATCATTCGATTTAGCTGATAAATACAACTCAAATTATTTCATGGAATTTGATTTCACAGATAAATTGGATACTCTGTTTGATCAGGACCACAGAAAATATGGTGAGGCTGTGAAGTTATCAGCGGCAAAAATGATTTCATCAAATAAAAAGGACGAGTTGTTGCAGCGGAATGATATGCGTCAATCTCTTCGTATGTCAACATCGGGAAGAGGTAAAGAGACTACTTTTATCTAG 2451 0.4398 MRLNGAVRSWHVAIVHHAITAHSLFLFLFVLLCVSKQSDKQTENNKTLFEPLHYTFLSLSLFFLSLTFRTPKRDMHPWDPRMSHDRSRHPRKSSADLATYGEKDEGWILITGLCHFRKREKTKPKERGVFATRFLAGSEPRKMGCASSRRALAGSDFTPPGLLSLRSSSRKRCNGKRRNGVVEAREVDAGMEEEKEWKKGSLRGPVSLRLSCRFVEAEQNAAGWPSWLTSVAGEAIQGWVPLKTDSFERLDKIGQGTYSNVFQAREIETGRMVALKKVRFDKLKDDSIRFMAREIAILRSLDHPNIMKLDGIITSQQSNNIYLVFEYMEHDLAGLVASPDIKFTESQIKCYMRQLLSGIEHCHLRGIMHRDIKVSNILVNNEGVLKIGDFGLANTLSPNSKQPLTSRVVTLWYRPPELLMGSTDYGVSVDLWSVGCVFAELFLGKPILKGRTEVEQLHRIFKLCGSPPEEYWKKSKLPLATMFKPQTNYEASLQERCKGFPVTAVKLLETLLSIDPSKRGTASSALTSEYFSTKPYACDPSLMPKYPPSKEMDARNREEASRKKTLGKGREAVTSKRNRRVHKVSHDHINFNKPAWKEEMQNSSQNIGTGDDGWAHVAKVKIGALHKEQPKASCDGKSEAAQVVDGCNGNSVYSGPAPVSASSGFTWAKRRKPEASSILSDGSRSKISALDPIFVKGKCDLTKHEIEVSERKHGFNTRHQDRIFSHVLPIYQAPRFQQKSFDLADKYNSNYFMEFDFTDKLDTLFDQDHRKYGEAVKLSAAKMISSNKKDELLQRNDMRQSLRMSTSGRGKETTFI 816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1262g00017 816 SUPERFAMILY Protein kinase-like (PK-like) 241 537 IPR011009 -
Vium1262g00017 816 Gene3D Phosphorylase Kinase; domain 1 234 329 - -
Vium1262g00017 816 PANTHER CELL DIVISION PROTEIN KINASE 245 535 - -
Vium1262g00017 816 CDD STKc_CDK9_like 247 531 - -
Vium1262g00017 816 SMART serkin_6 247 531 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1262g00017 816 FunFam probable serine/threonine-protein kinase At1g54610 234 329 - -
Vium1262g00017 816 Pfam Protein kinase domain 247 531 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium1262g00017 816 Gene3D Transferase(Phosphotransferase) domain 1 330 570 - -
Vium1262g00017 816 FunFam probable serine/threonine-protein kinase At1g54610 330 571 - -
Vium1262g00017 816 MobiDBLite consensus disorder prediction 550 574 - -
Vium1262g00017 816 MobiDBLite consensus disorder prediction 77 96 - -
Vium1262g00017 816 ProSitePatterns Protein kinases ATP-binding region signature. 253 276 IPR017441 GO:0005524
Vium1262g00017 816 ProSitePatterns Serine/Threonine protein kinases active-site signature. 367 379 IPR008271 GO:0004672|GO:0006468
Vium1262g00017 816 MobiDBLite consensus disorder prediction 547 584 - -
Vium1262g00017 816 ProSiteProfiles Protein kinase domain profile. 247 531 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1262g00017 Vium-Chr1262 88669 95100 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1262g00017 239 606 Core Cell Cycle Gene Families AT5G10270 43.377 8.02e-106 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Vium1262g00017 Pkinase 3.9e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1262g00017 - - vum:124825561 1602.8