Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1262g00014 ATGTCAAAAGTTTTAGAGAGCCCCTTTGGGATGTCTCACCAACAGGCTTTAGCACAGGTTACAGCTCAAGCTGTCCTAGCGCAATCTCATATGCACATGCAAGCTGATTACCAGATGCATCCAGTAACTGCCCCTACTGAACCACCTGTACAACAGCCATCTTTTGCTCTAAATGAAGCTTCAGAGCAGAAAATAGTACCATCTGTATCAGAAGCTAAAAATGCTCAACTGGAAACGTCGGATATCTCACAGGCTGATAAGAAATATCAGCTGGCTTCTCAGGCCGTTGACAAGCCTGCAGATGATGGCTACAATTGGCGCAAGTATGGGCAGAAGCAGGTTAAAGGCAGCGAGTATCCAAGGAGCTACTACAAATGTACACATCTGAATTGCCTAGTGAAGAAAAAAGTTGAGCGTGCCCCTGATGGACACATAACTGAAATTATATATAAAGGTCAGCATAACCATGAAAAGCCTCAGGCAAATAGACGTGTCAAGGATAATAGTGATTCAAATGGAAGTGCAATTGTTCAGCCTAAGTCTGAGTCAAACTCACAAGGTTGGGTTGGACAACAAGTAAACAAGTTTAGTGAAAACATTCCTGATTGTTCAGTTCCTGAACGTGACCAGATCTCCAATCAAGGGGCACCTAGGCAACTACTACCTGGGTCAAGTGGGAGCGAGGAAGTGGGTGATGTAGATAATAGGGAAGAGGCGGATGACATTGAGCCAAACCCTAAGAGAAGGAATACTGATGTTGCGGTTTCTGAAGTACCTCTTTCTCAGAAGACTGTCACAGAACCCAAAATTATTGTGCAAACAAGAAGCGAAGTTGATCTTTTGGATGATGGTTACAGGTGGAGAAAGTATGGTCAGAAAGTGGTGAAGGGAAATCCTCATCCGAGGAGTTATTACAAATGCACAAGTGCAGGATGCAACGTGCGTAAGCATGTTGAGAGAGCTTCAACCGACCCCAAAGCTGTCATAACCACGTACGAGGGTAAGCATAATCATGATGTGCCTGCTGCTAGAAATAGCAGCCACAACACAGCTAATACAAATTCAATGCCATTAAAACCGCACAATGTCGTACCGGAGAAGCACCCTTTGCTTAAAGACATGGATTTTGGAAGCAATGACCAAAGGCCTGTACATTTGCGCTTAAAAGAAGAGCAAATCATAGTATAA 1188 0.4386 MSKVLESPFGMSHQQALAQVTAQAVLAQSHMHMQADYQMHPVTAPTEPPVQQPSFALNEASEQKIVPSVSEAKNAQLETSDISQADKKYQLASQAVDKPADDGYNWRKYGQKQVKGSEYPRSYYKCTHLNCLVKKKVERAPDGHITEIIYKGQHNHEKPQANRRVKDNSDSNGSAIVQPKSESNSQGWVGQQVNKFSENIPDCSVPERDQISNQGAPRQLLPGSSGSEEVGDVDNREEADDIEPNPKRRNTDVAVSEVPLSQKTVTEPKIIVQTRSEVDLLDDGYRWRKYGQKVVKGNPHPRSYYKCTSAGCNVRKHVERASTDPKAVITTYEGKHNHDVPAARNSSHNTANTNSMPLKPHNVVPEKHPLLKDMDFGSNDQRPVHLRLKEEQIIV 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1262g00014 395 MobiDBLite consensus disorder prediction 149 256 - -
Vium1262g00014 395 Pfam WRKY DNA -binding domain 282 339 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium1262g00014 395 Pfam WRKY DNA -binding domain 101 157 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium1262g00014 395 MobiDBLite consensus disorder prediction 343 359 - -
Vium1262g00014 395 ProSiteProfiles WRKY domain profile. 95 159 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium1262g00014 395 MobiDBLite consensus disorder prediction 149 165 - -
Vium1262g00014 395 MobiDBLite consensus disorder prediction 337 361 - -
Vium1262g00014 395 SMART WRKY_cls 100 158 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium1262g00014 395 SMART WRKY_cls 281 340 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium1262g00014 395 MobiDBLite consensus disorder prediction 206 221 - -
Vium1262g00014 395 FunFam WRKY transcription factor 33 268 334 - -
Vium1262g00014 395 Gene3D WRKY domain 266 342 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium1262g00014 395 Gene3D WRKY domain 85 160 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium1262g00014 395 FunFam WRKY transcription factor 88 160 - -
Vium1262g00014 395 SUPERFAMILY WRKY DNA-binding domain 98 159 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium1262g00014 395 ProSiteProfiles WRKY domain profile. 276 341 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium1262g00014 395 MobiDBLite consensus disorder prediction 166 199 - -
Vium1262g00014 395 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 23 356 IPR044810 GO:0003700
Vium1262g00014 395 SUPERFAMILY WRKY DNA-binding domain 273 341 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1262g00014 Vium-Chr1262 75994 80428 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1262g00014 5 394 WRKY Transcription Factor Family AT2G03340 54.364 4.84e-121 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vium1262g00014 WRKY 7e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1262g00014 - - gmx:100796679 711.449