Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1262g00013 ATGTCCACTCCCAACGCCGACTCCGGCACGGCGCCGCATCCGCGCCCCACCATCACACTTCCTCCTCGTCCCTCCGCGGAGGCCTTTTTCTCCGCCGCTGGCGGCGCTAGCCCCGGTCCCATGACCCTCGTCTCCAGCTTCTTCGGTTCTGATGCCGCCGCCGACTGTCGCTCCTTCTCCCAGCTTCTTGCTGGCGCCATGGCCTCCCCGATGGCCTTCTCTGCCACCTTGGCCGACAACTCCGGCAACGACGATGATGGGCCCCACAAGGGCTTCAAGCAGAGCAGACCCATGAATTTGGTCATTGCTCGTTCCCCTGTCTTCACTGTTCCACCCGGGTTGAGCCCTTCTGGGTTTCTTAACTCTCCTGGCTTCTTTTCCCCTCAGAGCCCCTTTGGGATGTCTCACCAACAGGCTTTAGCACAGGTTACAGCTCAAGCTGTCCTAGCGCAATCTCATATGCACATGCAAGCTGATTACCAGATGCATCCAGTAACTGCCCCTACTGAACCACCTGTACAACAGCCATCTTTTGCTCTAAATGAAGCTTCAGAGCAGAAAATAGTACCATCTGTATCAGAAGCTAAAAATGCTCAACTGGAAACGTCGGATATCTCACAGGCTGATAAGAAATATCAGCTGGCTTCTCAGGCCGTTGACAAGCCTGCAGATGATGGCTACAATTGGCGCAAGTATGGGCAGAAGCAGGTTAAAGGCAGCGAGTATCCAAGGAGCTACTACAAATGTACACATCTGAATTGCCTAGTGAAGAAAAAAGTTGAGCGTGCCCCTGATGGACACATAACTGAAATTATATATAAAGGTCAGCATAACCATGAAAAGCCTCAGGCAAATAGACGTGTCAAGGATAATAGTGATTCAAATGGAAGTGCAATTGTTCAGCCTAAGTCTGAGTCAAACTCACAAGGTTGGGTTGGACAACAAGTAAACAAGTTTAGTGAAAACATTCCTGATTGTTCAGTTCCTGAACGTGACCAGATCTCCAATCAAGGGGCACCTAGGCAACTACTACCTGGGTCAAGTGGGAGCGAGGAAGTGGGTGATGTAGATAATAGGGAAGAGGCGGATGACATTGAGCCAAACCCTAAGAGAAGGAATACTGATGTTGCGGTTTCTGAAGTACCTCTTTCTCAGAAGACTGTCACAGAACCCAAAATTATTGTGCAAACAAGAAGCGAAGTTGATCTTTTGGATGATGGTTACAGGTGGAGAAAGTATGGTCAGAAAGTGGTGAAGGGAAATCCTCATCCGAGGAGTTATTACAAATGCACAAGTGCAGGATGCAACGTGCGTAAGCATGTTGAGAGAGCTTCAACCGACCCCAAAGCTGTCATAACCACGTACGAGGGTAAGCATAATCATGATGTGCCTGCTGCTAGAAATAGCAGCCACAACACAGCTAATACAAATTCAATGCCATTAAAACCGCACAATGTCGTACCGGAGAAGCACCCTTTGCTTAAAGACATGGATTTTGGAAGCAATGACCAAAGGCCTGTACATTTGCGCTTAAAAGAAGAGCAAATCATAGTATAA 1557 0.4875 MSTPNADSGTAPHPRPTITLPPRPSAEAFFSAAGGASPGPMTLVSSFFGSDAAADCRSFSQLLAGAMASPMAFSATLADNSGNDDDGPHKGFKQSRPMNLVIARSPVFTVPPGLSPSGFLNSPGFFSPQSPFGMSHQQALAQVTAQAVLAQSHMHMQADYQMHPVTAPTEPPVQQPSFALNEASEQKIVPSVSEAKNAQLETSDISQADKKYQLASQAVDKPADDGYNWRKYGQKQVKGSEYPRSYYKCTHLNCLVKKKVERAPDGHITEIIYKGQHNHEKPQANRRVKDNSDSNGSAIVQPKSESNSQGWVGQQVNKFSENIPDCSVPERDQISNQGAPRQLLPGSSGSEEVGDVDNREEADDIEPNPKRRNTDVAVSEVPLSQKTVTEPKIIVQTRSEVDLLDDGYRWRKYGQKVVKGNPHPRSYYKCTSAGCNVRKHVERASTDPKAVITTYEGKHNHDVPAARNSSHNTANTNSMPLKPHNVVPEKHPLLKDMDFGSNDQRPVHLRLKEEQIIV 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1262g00013 518 ProSiteProfiles WRKY domain profile. 399 464 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium1262g00013 518 MobiDBLite consensus disorder prediction 460 484 - -
Vium1262g00013 518 SUPERFAMILY WRKY DNA-binding domain 221 282 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium1262g00013 518 FunFam WRKY transcription factor 33 391 457 - -
Vium1262g00013 518 SUPERFAMILY WRKY DNA-binding domain 396 464 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium1262g00013 518 MobiDBLite consensus disorder prediction 289 322 - -
Vium1262g00013 518 MobiDBLite consensus disorder prediction 329 344 - -
Vium1262g00013 518 Pfam WRKY DNA -binding domain 224 280 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium1262g00013 518 Pfam WRKY DNA -binding domain 405 461 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium1262g00013 518 Gene3D WRKY domain 208 283 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium1262g00013 518 Gene3D WRKY domain 389 465 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vium1262g00013 518 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 122 479 IPR044810 GO:0003700
Vium1262g00013 518 SMART WRKY_cls 223 281 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium1262g00013 518 SMART WRKY_cls 404 463 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vium1262g00013 518 FunFam WRKY transcription factor 211 283 - -
Vium1262g00013 518 MobiDBLite consensus disorder prediction 272 379 - -
Vium1262g00013 518 MobiDBLite consensus disorder prediction 272 288 - -
Vium1262g00013 518 MobiDBLite consensus disorder prediction 1 33 - -
Vium1262g00013 518 MobiDBLite consensus disorder prediction 466 482 - -
Vium1262g00013 518 ProSiteProfiles WRKY domain profile. 218 282 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1262g00013 Vium-Chr1262 75465 80428 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1262g00013 15 516 WRKY Transcription Factor Family AT2G03340 52.354 4.32e-149 435
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vium1262g00013 WRKY 1e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1262g00013 - - gmx:100796679 943.725