Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1262g00012 ATGAAATCATTGATTCCTAATCAGGTGTATCGTCCACCAGTGGAAGCTTACCGTAGCAGCTGTAGACAGATTAAGAAAGGGTATCAGAGAAACAACAGCCCTCGCTATTATATATCTGTTCTTGAAGATGATAGTGATGGAAAGCAATCAGAAACAGAAGAACCTCGTATTGTAGTTCAAATGGACACAGAGAGTCCTGTTATATACCAGAAGTCATGTTTGGACCATTACTTTGATAAACCTATACAAGTAAGGGGAGATGTACGTGTCATATTCTATGAGAAAATGATAGGTGGTCGCCTTTTCTACTGCTGTTTTAATACAGCTTTTATTAAGAACAGCTTGCTACAGCTCACAGTACAAGAGTTGGACAAAGTTGGGAAGAAGGGAAGCTCAATATGTGGTCCTGACTTCTGCATAGAATTATTGTTTGGTCCTGCTAATACAGGATATTCGTCATCAAATATATCCAATGATGAACACTCTAGTGATGATTCTTTATAA 504 0.381 MKSLIPNQVYRPPVEAYRSSCRQIKKGYQRNNSPRYYISVLEDDSDGKQSETEEPRIVVQMDTESPVIYQKSCLDHYFDKPIQVRGDVRVIFYEKMIGGRLFYCCFNTAFIKNSLLQLTVQELDKVGKKGSSICGPDFCIELLFGPANTGYSSSNISNDEHSSDDSL 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1262g00012 167 Gene3D - 17 149 - -
Vium1262g00012 167 SMART PTEN_C2_2 1 146 IPR014020 -
Vium1262g00012 167 Pfam C2 domain of PTEN tumour-suppressor protein 64 144 IPR014020 -
Vium1262g00012 167 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 10 157 - -
Vium1262g00012 167 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 51 146 IPR035892 -
Vium1262g00012 167 ProSiteProfiles C2 tensin-type domain profile. 1 147 IPR014020 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1262g00012 Vium-Chr1262 61655 62925 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1262g00012 5 147 Protein tyrosine phosphatase (PTP) family AT5G39400 63.448 2.21e-62 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1262g00012 K01110 - vum:124825570 340.502