Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1262g00007 ATGGGATTGTGTTTCTCAGAGAAGGAGAACCATGTTGTGGTGGAAAGAGCCGACACTGAGACCACCCTCCGTGCCATGGTGCTGGGTTCCAACGTGGTGTTTCCCGCGGCTCTAAACGCTGCAATTGAGCTCAACGTGTTTGACATAATTGCGAAGGAAGGTTCAGTGGAGAGTGGTGGGTTCATGTCACCCTCTGAAATCGCTTCCAAGTTATTGATACCAACACAGCAACAACACCGCCGTGATTTGGCCAATAGACTGGAGCGTTTGTTGCGATTGCTTGCTAGCTACTCTCTTCTCACTGTTTCTTCTCGCAGCGACGGAGATGGTGGCAGCGTGAGAGTATATGGAGTTTCCGCATCGGGTAAATACTTCGTGCGTGATGAAAATGGTGATGGTTACCTCGCCTCTTTCACTTCGTTTCTGTGTCACCCTGCATTATCAGGGGTGTGGCTGAATTTTAAGGAGGTGGTTATTGATCCTGAGATTGACCTATTCAAGAAGGTTCATGGAATGTCCAAGTTCGAATACTTTGGGAAATATCCTGAAATAAACCACGTATTTAACACAGCAATGTATGACATTTGCACCACCCACATGAAAAAAATACTCGAAGTATACACAGGATACGAGGGCATATCAATTTTGGTTGATGTAGGAGGTGGAACTGGACAGTGCCTCAAAATGATCATCTCCAAATACCCTTCAATTAAGGGAATTAATTTTGACCTCCCACATGTAATTGAAAACTCATCACCCATTCCAGGGGTTGAGCATGTTGGGGGGAATATGTTTGAAGGTGTTCCACAGGGTGACGCAATTATGCTTAAGGCTATAACCCATAATTGGTCCGATGAAAAAGTCATAGAACTTTTGAGCAATTGTCACAAAGCTTTGCCACCAAAGGGAAAGGTCATTGTTGGGGATTTCATACTGCCAGAAGATCCAGAACCCACAAATGAACATAAAATGATTTCAATTCTTGATAACATCATGTTTATTACTCCTGGTGGAAGGGAAAGAACTGAGAAAGAATTTGATAGTCTGGGCAAGAGTTCTGGATTTTCTAGGTTTGAAGTTGTCTGTCGAGCTTTCTCTACAATGGCGCTGATGGAATTTTACAAATAA 1128 0.4362 MGLCFSEKENHVVVERADTETTLRAMVLGSNVVFPAALNAAIELNVFDIIAKEGSVESGGFMSPSEIASKLLIPTQQQHRRDLANRLERLLRLLASYSLLTVSSRSDGDGGSVRVYGVSASGKYFVRDENGDGYLASFTSFLCHPALSGVWLNFKEVVIDPEIDLFKKVHGMSKFEYFGKYPEINHVFNTAMYDICTTHMKKILEVYTGYEGISILVDVGGGTGQCLKMIISKYPSIKGINFDLPHVIENSSPIPGVEHVGGNMFEGVPQGDAIMLKAITHNWSDEKVIELLSNCHKALPPKGKVIVGDFILPEDPEPTNEHKMISILDNIMFITPGGRERTEKEFDSLGKSSGFSRFEVVCRAFSTMALMEFYK 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1262g00007 375 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 26 375 IPR016461 GO:0008168
Vium1262g00007 375 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 134 372 IPR029063 -
Vium1262g00007 375 PIRSF O-mtase 4 375 IPR016461 GO:0008168
Vium1262g00007 375 Gene3D Vaccinia Virus protein VP39 185 364 IPR029063 -
Vium1262g00007 375 FunFam Caffeic acid 3-O-methyltransferase 5 125 - -
Vium1262g00007 375 Pfam O-methyltransferase domain 151 356 IPR001077 GO:0008171
Vium1262g00007 375 PANTHER O-METHYLTRANSFERASE 25 365 IPR016461 GO:0008168
Vium1262g00007 375 Gene3D - 33 203 IPR036388 -
Vium1262g00007 375 FunFam Caffeic acid O-methyltransferase 129 375 - -
Vium1262g00007 375 SUPERFAMILY "Winged helix" DNA-binding domain 20 129 IPR036390 -
Vium1262g00007 375 Pfam Dimerisation domain 37 95 IPR012967 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1262g00007 Vium-Chr1262 49721 52688 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1262g00007 14 375 Monolignol Biosynthesis Gene Families AT5G54160 48.209 8.27e-108 319
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1262g00007 - - gmx:100798295 605.52