Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1262g00005 ATGGGATTGAAACTTACAAAGCAGGAACCACCCAAAGCTGAGGACCTAAGTATACATCATCACATGATTAATTACCTAACCAAGAATTTTATTCGTAACTTGGTATCTAAGCAACGTAGAAGAATGCTTATAGCTGGTTATGATCTTGACATGTCATATATCACCGATAGAGTATTAGCAATGTCATTTCCTTCTCAACGAATGCGAGCAATGTATCGAAATCCTCTCTGGCAGGTTAAATCTGTGTTGGACATGAGACATTATGAGCATTATAAGATCTACAATCTCTGTATAGAAGAAAGTTATGATCCTGCTCACTTTTATGGACGTGTGGAAGCATACCCCTTTGATGATAACCATGTGCCATCTCTTGAAATGGTTAGAGATTTCTGTGAAAGTGTGGATTCATGGCTGTCAAGTGACCCAAAAAATATTGCTGTTATTCATTGCATGGCAGGAAAAGGTAGAACAGGATTAATGGTGTGTGCATACTTAACTTATTGCGGCATGTCAGCAGATGAGGCTCTTCAACTGTATGCAGACAGACGAACAACCAATAATGAAGGAGTATCAATACCAAGTCAAAGACGATATGTGGCATATTGGGACAGTCTACTTTCAAATTGTGTCCCAAGACAAACTGGAAATGGAACACTAAAAGTGAAGTTGCCTCCACCGTCTAGCAGAGAATTACGGCGTATCCGGCTTTATGATACAGTCAACATTGACACTATATTCTTTGTCATCTCAGAGCTACAAGAGATTCCTAATCAGGTGTATCGTCCACCAGTGGAAGCTTACCGTAGCAGCTGTAGACAGATTAAGAAAGGGTATCAGAGAAACAACAGCCCTCGCTATTATATATCTGTTCTTGAAGATGATAGTGATGGAAAGCAATCAGAAACAGAAGAACCTCGAATTGTAGTTCAAATGGACACAGAGAGTCCTGTTATATACCAGAAGTCATGTTTGGACCATTACTTTGATAAACCTATACAAGTAAGTGGAGATGTACGTGTCATATTCTATGAGAAAATGATAGGTGGTCGCCTTTTCTACTGCTGTTTTAATACAGCTTTTATTAAGAACAGCTTGCTTCAGCTCACAGTACAAGAGTTGGACAAAGTTGGGAAGAAGGGAAGCTCAATATGTGGTCCTGACTTCTGCCTAGAATTATTGTTTGGTCCTGCTAACACAGGATATTCGTCATCAAATATATCCAATGATGAACACTCTAGTGATGATTCTTTATAA 1254 0.3907 MGLKLTKQEPPKAEDLSIHHHMINYLTKNFIRNLVSKQRRRMLIAGYDLDMSYITDRVLAMSFPSQRMRAMYRNPLWQVKSVLDMRHYEHYKIYNLCIEESYDPAHFYGRVEAYPFDDNHVPSLEMVRDFCESVDSWLSSDPKNIAVIHCMAGKGRTGLMVCAYLTYCGMSADEALQLYADRRTTNNEGVSIPSQRRYVAYWDSLLSNCVPRQTGNGTLKVKLPPPSSRELRRIRLYDTVNIDTIFFVISELQEIPNQVYRPPVEAYRSSCRQIKKGYQRNNSPRYYISVLEDDSDGKQSETEEPRIVVQMDTESPVIYQKSCLDHYFDKPIQVSGDVRVIFYEKMIGGRLFYCCFNTAFIKNSLLQLTVQELDKVGKKGSSICGPDFCLELLFGPANTGYSSSNISNDEHSSDDSL 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1262g00005 417 ProSitePatterns Tyrosine specific protein phosphatases active site. 148 158 IPR016130 GO:0016311|GO:0016791
Vium1262g00005 417 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 128 183 IPR000387 GO:0016311|GO:0016791
Vium1262g00005 417 Gene3D Protein tyrosine phosphatase superfamily 26 210 IPR029021 -
Vium1262g00005 417 CDD PTP_PTEN 50 205 IPR045101 GO:0016791
Vium1262g00005 417 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 46 208 IPR029021 -
Vium1262g00005 417 Pfam Tyrosine phosphatase family 142 180 IPR026893 GO:0004721
Vium1262g00005 417 ProSiteProfiles Phosphatase tensin-type domain profile. 40 209 IPR029023 -
Vium1262g00005 417 FunFam Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN 27 210 - -
Vium1262g00005 417 ProSiteProfiles C2 tensin-type domain profile. 242 397 IPR014020 -
Vium1262g00005 417 SMART PTEN_C2_2 224 396 IPR014020 -
Vium1262g00005 417 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 20 406 - -
Vium1262g00005 417 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 301 396 IPR035892 -
Vium1262g00005 417 Gene3D - 268 399 - -
Vium1262g00005 417 Pfam C2 domain of PTEN tumour-suppressor protein 320 394 IPR014020 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1262g00005 Vium-Chr1262 40662 45713 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1262g00005 1 402 Protein tyrosine phosphatase (PTP) family AT5G39400 66.749 0.0 563
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1262g00005 K01110 - gmx:100809938 771.926