Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1262g00003 ATGCCCAACACCTTCTCCTCTCTCTTCTGGTGGATTGGTAAAAAGTTGCGAGGAAGGAACACGGTTAGTAATGGAGAGAGTGGGAACAACGACAACGTTGTCGCTGCCGTTGTCGTGGATGATAATCCGTTTGGCAGCACGGTAGAGTGTTACGCTTGCACGCAGGTTGGCGTGCCGGCGTTTCACTCAACCAGCTGCGACAGTTTTAACCAGCCGGAATGGGAGGCTTCGGCCGGGTCTTCCCTCGTTCCGATTCAGAATCGGCCCAATAAGGTTCTCGGGTTTCGGGCCGCGTCCGGTTCGAATATTGGACCGTTTGGGCGGGTTTTGGATCCACGGAGCAAGCGCGTCCAAAAGTGGAATCGTGCGCTGCTGCTGGCGCGTGGTGTGGCGTTGGCGATTGATCCGCTGTTCTTCTACTCGCTTTCGATCGGGAGGGAGGGGTCGCCGTGCCTGTACATGGACGGAGGGCTGGCGGCGATGGTGACGGTGGCGCGGACTTGCGTGGACGCGGTGCACCTCTTGCACGTGTGGCTGCAATTCAGGCTGGCGTACGTATCGCGCGAGTCGCTGGTAGTTGGGTGCGGGAAACTTGTGTGGGACGCGCGTGAGATTGCGTCGCATTACCTGCGATCGTTGAAGGGGTTCTGGTTCGACGCATTCGTGATCCTCCCAGTTCCCCAGGCTGTGTTTTGGTTGATAGTGCCAAAATTGATAAGAGAAGAGCGAATTAAAATCATTATGACCATAATGCTATTGATTTTTTTGTTCCAATTTCTCCCCAAAGTTTACCACAGCATCTGCATGATGAGAAGAATGCAAAAAGTCACGGGCTACATCTTTGGTACCATTTGGTGGGGCTTTGGTCTCAATCTCATAGCTTATTTTATTGCTTCCCATGTTGCTGGAGGGTGCTGGTATGTCCTTGCAATTCAACGAGTTGCGTCGTGCCTTCGGCAGCAGTGTCAGAGAACTAATGGATGCAACCTTTCTGTGTCGTGCTCAGAGGAGATATGCTACCAGTCTTTGTCAGGCGCAATAGGAGATTCTTGTGGTGGAAACTCAACAGTAGTGTTAAAAAAGCCTTATTGCTTAGACGTTGAAGGACCTTTCAAATATGGGATCTACCAATGGGCACTTCCAGTCATATCAAGCAACTCTTTGGCTGTAAAGATTCTTTATCCCATTTTTTGGGGTTTGATGACCCTCAGCACTTTCGGAAATGATCTTGAACCCACAAGCAACTGGCTGGAAGTAATTTTCAGCATATGCATCGTACTCAGTGGACTATTGCTTTTCACATTATTGATTGGTAACATTCAGGTATTCTTACATGCTGTCATGGCAAAGAAGAGAAAGATGCAGCTTAGATGTCGAGATATGGAATGGTGGATGAGGAGGAGGCAGCTGCCATCACGATTAAGACAAAGAGTTCGCCATTTTGAACGTCAGAGATGGGCTGCGATGGGAGGAGAAGATGAGATGGAAATGATCAAAGACTTGCCTGAGGGGCTGAGGAGGGACATCAAGCGCCATCTTTGCCTCGACCTCATTAGAAAGGTTCCTTTGTTCCACAACTTGGATGAACTTATTCTTGACAACATCTGTGATAGGGTGAGGCCCTTAGTGTTCTCTAAAGATGAAAAGATAATAAGAGAAGGTGATCCTGTACCAAGGATGGTGTTCATTGTCCGAGGACGCATGAAACGCAGCCAAAGTCTGAGCAAAGGCATGGTAGCCTCAAGCATTCTTGAGCCAGGAGGGTTTTTGGGTGACGAGCTACTTTCATGGTGCCTTCGCCGGCCGTTTATAGATAGACTTCCGGCCTCCTCAGCCACATTTGTGTGTCTTGAATCAGTAGAAGCCTTTGGCCTTGATGCAGAGCACTTGAGGTACATCACTGATCACTTCAGGTACAAGTTTGCCAACGAGAGGCTGAAGAGAACAGCAAGATATTACTCATCCAATTGGAGAACCTGGGCTGCTGTCAACATTCAATTTGCTTGGAGACGTTACAGGCAGAGGACTAGAGGTCCGGTGACGCCTGTAAGGGAGAGTGGAGGCACTGAGCGCAGGCTCTTGCAATATGCTGCAATGTTCATGTCAATAAGGCCACATGACCATCTTGAATAA 2133 0.4937 MPNTFSSLFWWIGKKLRGRNTVSNGESGNNDNVVAAVVVDDNPFGSTVECYACTQVGVPAFHSTSCDSFNQPEWEASAGSSLVPIQNRPNKVLGFRAASGSNIGPFGRVLDPRSKRVQKWNRALLLARGVALAIDPLFFYSLSIGREGSPCLYMDGGLAAMVTVARTCVDAVHLLHVWLQFRLAYVSRESLVVGCGKLVWDAREIASHYLRSLKGFWFDAFVILPVPQAVFWLIVPKLIREERIKIIMTIMLLIFLFQFLPKVYHSICMMRRMQKVTGYIFGTIWWGFGLNLIAYFIASHVAGGCWYVLAIQRVASCLRQQCQRTNGCNLSVSCSEEICYQSLSGAIGDSCGGNSTVVLKKPYCLDVEGPFKYGIYQWALPVISSNSLAVKILYPIFWGLMTLSTFGNDLEPTSNWLEVIFSICIVLSGLLLFTLLIGNIQVFLHAVMAKKRKMQLRCRDMEWWMRRRQLPSRLRQRVRHFERQRWAAMGGEDEMEMIKDLPEGLRRDIKRHLCLDLIRKVPLFHNLDELILDNICDRVRPLVFSKDEKIIREGDPVPRMVFIVRGRMKRSQSLSKGMVASSILEPGGFLGDELLSWCLRRPFIDRLPASSATFVCLESVEAFGLDAEHLRYITDHFRYKFANERLKRTARYYSSNWRTWAAVNIQFAWRRYRQRTRGPVTPVRESGGTERRLLQYAAMFMSIRPHDHLE 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1262g00003 710 ProSiteProfiles cAMP/cGMP binding motif profile. 523 633 IPR000595 -
Vium1262g00003 710 Gene3D Jelly Rolls 521 639 IPR014710 -
Vium1262g00003 710 SUPERFAMILY Voltage-gated potassium channels 111 444 - -
Vium1262g00003 710 Gene3D - 151 446 - -
Vium1262g00003 710 SUPERFAMILY cAMP-binding domain-like 450 637 IPR018490 -
Vium1262g00003 710 CDD CAP_ED 523 633 IPR000595 -
Vium1262g00003 710 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 99 676 - -
Vium1262g00003 710 SMART cnmp_10 523 649 IPR000595 -
Vium1262g00003 710 Pfam Ion transport protein 120 441 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vium1262g00003 710 Gene3D Helix hairpin bin 449 514 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1262g00003 Vium-Chr1262 33673 40074 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1262g00003 11 710 Ion Channels AT5G15410 76.389 0.0 1053
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1262g00003 K05391 - gmx:100798823 1307.74