Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12626g00019 ATGTCCACTTCTCGTTGTCTATGTTTTAATATATCTGGCAGGATTAGAGGGAAGAGACTAAAAATGGTGAAACCAACATATGAAAGATTTTCAAAGGATTTTGTAATGGGAGGAGCAGCAGCAATCATATCAAAGACTGCTGCAGCACCAATTGAGAGAGTAAAGCTTTTATTGCAAAACCAAGGTGAAATGATTAAAAGAGGACAACTCAAAAGACCATACTTGGGCGTGTCTGATGGCTTTAAGAGGGTCTTCACAGAGGAGGGTTTGATTGCCTTTTGGAGAGGTCACCAGGCCAATGTTATCCGATACTTTCCCACACAGGCTTTCAATTTTGCATTCAAAGGTTACTTCAAAAGCATTTTTGGGTATTCCAAAGAGAGAGACGGGTACATTAAGTGGTTTACTGGGAATGTGGCTTCAGGCAGTGCTGCAGGAGCAACAACTTCAGTTCTACTATATCATTTAGATTACGCACGTACACGATTGGGCACTGATGCAATAGAGTGCCGCGGTACCAGTCAACGCCAGTTTAAAGGACTAATTGATGTGTATAGGAAGACCTTATCAAGTGATGGAATTGCTGGATTGTACAGGGGATTTGGCATTTCTATTTGGGGAATTGCCATGTATCGTGGGATGTACTTTGGGATCTATGACACCATGAAGCCTATTGTTTTAGTGGGGCCATTTGAGGGGAACTTTCTTGCTAGTTTCTTCTTAGGGTGGAGCATCACAACTTTTTCAGGGGTTTGTGCATACCCTTTTGATACATTGCGCAGGAGAATGATGCTTACCTCTGGACATCCAAACAAGTACCGTAATTCAATACATGCATTTCGTGATATTGTTGGACAAGAGGGTTTCTTAGCTCTATTTCGAGGAGTTACAGCAAACATGCTTCTTGGTATGGCAGGAGCTGGGGTGCTTGCTGGATATGATCAGCTGAATAGCATCTCATCCAGACATAGTCACTATAACGAGACAAATCAAAGAGTTTTGAAATGA 1008 0.4196 MSTSRCLCFNISGRIRGKRLKMVKPTYERFSKDFVMGGAAAIISKTAAAPIERVKLLLQNQGEMIKRGQLKRPYLGVSDGFKRVFTEEGLIAFWRGHQANVIRYFPTQAFNFAFKGYFKSIFGYSKERDGYIKWFTGNVASGSAAGATTSVLLYHLDYARTRLGTDAIECRGTSQRQFKGLIDVYRKTLSSDGIAGLYRGFGISIWGIAMYRGMYFGIYDTMKPIVLVGPFEGNFLASFFLGWSITTFSGVCAYPFDTLRRRMMLTSGHPNKYRNSIHAFRDIVGQEGFLALFRGVTANMLLGMAGAGVLAGYDQLNSISSRHSHYNETNQRVLK 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12626g00019 335 PRINTS Mitochondrial carrier protein signature 242 264 IPR002067 GO:0055085
Vium12626g00019 335 PRINTS Mitochondrial carrier protein signature 148 166 IPR002067 GO:0055085
Vium12626g00019 335 PRINTS Mitochondrial carrier protein signature 33 46 IPR002067 GO:0055085
Vium12626g00019 335 PRINTS Mitochondrial carrier protein signature 96 116 IPR002067 GO:0055085
Vium12626g00019 335 PRINTS Mitochondrial carrier protein signature 46 60 IPR002067 GO:0055085
Vium12626g00019 335 PRINTS Mitochondrial carrier protein signature 198 216 IPR002067 GO:0055085
Vium12626g00019 335 SUPERFAMILY Mitochondrial carrier 29 316 IPR023395 -
Vium12626g00019 335 Gene3D Mitochondrial carrier domain 31 325 IPR023395 -
Vium12626g00019 335 Pfam Mitochondrial carrier protein 30 123 IPR018108 -
Vium12626g00019 335 Pfam Mitochondrial carrier protein 234 318 IPR018108 -
Vium12626g00019 335 Pfam Mitochondrial carrier protein 134 225 IPR018108 -
Vium12626g00019 335 PRINTS Adenine nucleotide translocator signature 30 42 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vium12626g00019 335 PRINTS Adenine nucleotide translocator signature 238 254 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vium12626g00019 335 PRINTS Adenine nucleotide translocator signature 133 146 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vium12626g00019 335 PRINTS Adenine nucleotide translocator signature 74 95 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vium12626g00019 335 PRINTS Adenine nucleotide translocator signature 107 119 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vium12626g00019 335 PANTHER ADP,ATP CARRIER PROTEIN 1-RELATED-RELATED 28 323 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vium12626g00019 335 FunFam ADP,ATP carrier protein ER-ANT1 31 325 - -
Vium12626g00019 335 ProSiteProfiles Solute carrier (Solcar) repeat profile. 233 319 IPR018108 -
Vium12626g00019 335 ProSiteProfiles Solute carrier (Solcar) repeat profile. 28 121 IPR018108 -
Vium12626g00019 335 ProSiteProfiles Solute carrier (Solcar) repeat profile. 133 225 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12626g00019 Vium-Chr12626 46070 49139 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12626g00019 28 323 Antiporters AT5G17400 77.703 2.57e-166 464
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12626g00019 K05863 - gmx:100798418 574.318