Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12626g00017 ATGGGAGGAGCAGCAGCAATCATATCAAAGACTGCTGCAGCACCAATTGAGAGAGTAAAGCTTTTATTGCAAAACCAAGGTGAAATGATTAAAAGAGGACAACTCAAAAGACCATACTTGGGCGTGTCTGATGGCTTTAAGAGGGTCTTCACAGAGGAGGGTTTGATTGCCTTTTGGAGAGGTCACCAGGCCAATGTTATCCGATACTTTCCCACACAGGCTTTCAATTTTGCATTCAAAGGTTACTTCAAAAGCATTTTTGGGTATTCCAAAGAGAGAGACGGGTACATTAAGTGGTTTACTGGGAATGTGGCTTCAGGCAGTGCTGCAGGAGCAACAACTTCAGTTCTACTATATCATTTAGATTACGCACGTACACGATTGGGCACTGATGCAATAGAGTGCCGCGGTACCAGTCAACGCCAGTTTAAAGGACTAATTGATGTGTATAGGAAGACCTTATCAAGTGATGGAATTGCTGGATTGTACAGGGGATTTGGCATTTCTATTTGGGGAATTGCCATGTATCGTGGGATGTACTTTGGGATCTATGACACCATGAAGCCTATTGTTTTAGTGGGGCCATTTGAGGGGAACTTTCTTGCTAGTTTCTTCTTAGGGTGGAGCATCACAACTTTTTCAGGGGTTTGTGCATACCCTTTTGATACATTGCGCAGGAGAATGATGCTTACCTCTGGACATCCAAACAAGTACCGTAATTCAATACATGCATTTCGTGATATTGTTGGACAAGAGGGTTTCTTAGCTCTATTTCGAGGAGTTACAGCAAACATGCTTCTTGGTATGGCAGGAGCTGGGGTGCTTGCTGGATATGATCAGCTGAATAGCATCTCATCCAGACATAGTCACTATAACGAGACAAATCAAAGAGTTTTGAAATGA 903 0.4297 MGGAAAIISKTAAAPIERVKLLLQNQGEMIKRGQLKRPYLGVSDGFKRVFTEEGLIAFWRGHQANVIRYFPTQAFNFAFKGYFKSIFGYSKERDGYIKWFTGNVASGSAAGATTSVLLYHLDYARTRLGTDAIECRGTSQRQFKGLIDVYRKTLSSDGIAGLYRGFGISIWGIAMYRGMYFGIYDTMKPIVLVGPFEGNFLASFFLGWSITTFSGVCAYPFDTLRRRMMLTSGHPNKYRNSIHAFRDIVGQEGFLALFRGVTANMLLGMAGAGVLAGYDQLNSISSRHSHYNETNQRVLK 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12626g00017 300 Gene3D Mitochondrial carrier domain 1 290 IPR023395 -
Vium12626g00017 300 PRINTS Mitochondrial carrier protein signature 207 229 IPR002067 GO:0055085
Vium12626g00017 300 PRINTS Mitochondrial carrier protein signature 163 181 IPR002067 GO:0055085
Vium12626g00017 300 PRINTS Mitochondrial carrier protein signature 61 81 IPR002067 GO:0055085
Vium12626g00017 300 PRINTS Mitochondrial carrier protein signature 113 131 IPR002067 GO:0055085
Vium12626g00017 300 PRINTS Mitochondrial carrier protein signature 11 25 IPR002067 GO:0055085
Vium12626g00017 300 ProSiteProfiles Solute carrier (Solcar) repeat profile. 98 190 IPR018108 -
Vium12626g00017 300 ProSiteProfiles Solute carrier (Solcar) repeat profile. 198 284 IPR018108 -
Vium12626g00017 300 ProSiteProfiles Solute carrier (Solcar) repeat profile. 1 86 IPR018108 -
Vium12626g00017 300 FunFam ADP,ATP carrier protein ER-ANT1 1 290 - -
Vium12626g00017 300 SUPERFAMILY Mitochondrial carrier 2 281 IPR023395 -
Vium12626g00017 300 PANTHER ADP,ATP CARRIER PROTEIN 1-RELATED-RELATED 1 288 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vium12626g00017 300 Pfam Mitochondrial carrier protein 99 190 IPR018108 -
Vium12626g00017 300 Pfam Mitochondrial carrier protein 1 88 IPR018108 -
Vium12626g00017 300 Pfam Mitochondrial carrier protein 199 283 IPR018108 -
Vium12626g00017 300 PRINTS Adenine nucleotide translocator signature 203 219 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vium12626g00017 300 PRINTS Adenine nucleotide translocator signature 72 84 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vium12626g00017 300 PRINTS Adenine nucleotide translocator signature 98 111 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
Vium12626g00017 300 PRINTS Adenine nucleotide translocator signature 39 60 IPR002113 GO:0005471|GO:0005743|GO:0140021|GO:1990544
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12626g00017 Vium-Chr12626 46031 49139 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12626g00017 1 288 Antiporters AT5G17400 77.431 2.87e-161 449
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12626g00017 K05863 - gmx:100798418 550.051