Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12626g00011 ATGGATGAATTACTCGGCCTTCTGAGAATTCACGTCAAGCGTGGCGTCAACCTCGCCATTCGCAATGTCAGCACCAGCGATCCATACGTCGTCGTTAAGATGGATAAACAGAGGCTCAAGACTCGTGTGATTAAAAAGGACATTAACCCTGAGTGGAACGAAGATCTTACGCTTTCTGTGACAGATCCCTCTGCTCCAGTGATACTGACCGTGTATGATCATGACACTTTCTCCATGGATGACAAAATGGGAGATGCGGAATTGGATATCTCACCGTATATAGAAGCCGTGAAGATGAAGGTGGAAGATCTTCCGAATGGAACCATAATCACGAGAATACATCCGTGTAGACAAAACTGCCTGGCGGAGGAAAGTTGCGTGGTTTTTGAGAATGGTAAAGTGCTGCAAGATGTTGTTCTGAGACTAAGACACGTGGAAAGCGGTGAGCTGGAACTTCAATTGGAATGGATTGATCTTCCTGGGGCCAAGGGATTGTGA 498 0.4639 MDELLGLLRIHVKRGVNLAIRNVSTSDPYVVVKMDKQRLKTRVIKKDINPEWNEDLTLSVTDPSAPVILTVYDHDTFSMDDKMGDAELDISPYIEAVKMKVEDLPNGTIITRIHPCRQNCLAEESCVVFENGKVLQDVVLRLRHVESGELELQLEWIDLPGAKGL 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12626g00011 165 ProSiteProfiles C2 domain profile. 1 106 IPR000008 -
Vium12626g00011 165 Gene3D C2 domain 3 163 IPR035892 -
Vium12626g00011 165 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 3 163 IPR044562 -
Vium12626g00011 165 CDD C2_ArfGAP 5 148 - -
Vium12626g00011 165 PRINTS C2 domain signature 67 75 IPR000008 -
Vium12626g00011 165 PRINTS C2 domain signature 22 34 IPR000008 -
Vium12626g00011 165 PRINTS C2 domain signature 46 59 IPR000008 -
Vium12626g00011 165 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 6 149 IPR035892 -
Vium12626g00011 165 SMART C2_3c 7 102 IPR000008 -
Vium12626g00011 165 Pfam C2 domain 6 92 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12626g00011 Vium-Chr12626 30172 31006 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12626g00011 38 165 C2H2 Transcription Factor Family AT1G70790 57.692 1.86e-51 159