Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12626g00004 ATGTCTTCTCTCCTAGATGATTGCAGGGAACACTTATTGGAAGTGGATGCAAATGCCAAACCCAAATTCCAGATAAAAAATCTCACCAGAGTTTCCGATGGTGGGGTTTCAATCCTCAAAGGCATCAACCTTGACATCCCAAAGGGTGTCATCGTCGGGGTCATAGGCCCCAGCGGCAGCGGCAAGTCAACGCTCTTAAGAGCCTTGAACCGCCTCTGGGAACCGCCCTCCGCCTCCGTCCTCCTCGACGGCCAAGACATCTCCCATCTCGACGTTCTCTCCCTCCGCCGGAAAGTTGGCATGCTCTTTCAACTCCCCGCCCTCTTTCAAGGCACAGCTGCTGACAACGTGAGGTATGGACCAGGGCTTAGAGGGAAAAAGCTAACTGATGATGAGGTGCGCAAGTTACTGGCGATGGCGGACTTAGACGCTTCTTTCATGGATAAGTCCGGGGATGAACTCTCTGTGGGTCAAGCACAAAGGGTTGCACTTGCTAGGACTTTGGCTAATTCACCGGAGGTTTTGTTGTTAGATGAGCCTACTAGTGCGTTAGATCCTATATCGACAGAAAACATAGAGGATGCCCTGATGAAGCTGAACAAGAACAGGGGCATGACAGTGATCATGGTTTCTCATAGCATCAAACAGATCCAGAGGATCGCAGACATAGTGTGCCTGCTTGTTGATGGTGAAATTGTTGAAGTTCTGAAGCCTGATAAACTCTCTGAGGCCAAGCATCCCATGGCACGAAGGTTTCTTGAACTCAGTTCTTAG 774 0.5013 MSSLLDDCREHLLEVDANAKPKFQIKNLTRVSDGGVSILKGINLDIPKGVIVGVIGPSGSGKSTLLRALNRLWEPPSASVLLDGQDISHLDVLSLRRKVGMLFQLPALFQGTAADNVRYGPGLRGKKLTDDEVRKLLAMADLDASFMDKSGDELSVGQAQRVALARTLANSPEVLLLDEPTSALDPISTENIEDALMKLNKNRGMTVIMVSHSIKQIQRIADIVCLLVDGEIVEVLKPDKLSEAKHPMARRFLELSS 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12626g00004 257 Gene3D - 21 256 IPR027417 -
Vium12626g00004 257 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 23 244 IPR027417 -
Vium12626g00004 257 Pfam ABC transporter 39 182 IPR003439 GO:0005524
Vium12626g00004 257 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 23 254 IPR003439 GO:0005524
Vium12626g00004 257 ProSitePatterns ABC transporters family signature. 154 168 IPR017871 GO:0005524|GO:0016887
Vium12626g00004 257 CDD ABC_PstB_phosphate_transporter 23 241 IPR005670 GO:0005315|GO:0016020|GO:0035435
Vium12626g00004 257 SMART AAA_5 48 231 IPR003593 GO:0016887
Vium12626g00004 257 FunFam ABC transporter, ATP-binding protein 20 252 - -
Vium12626g00004 257 PANTHER ABC TRANSPORTER I FAMILY MEMBER 17 5 256 IPR005670 GO:0005315|GO:0016020|GO:0035435
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12626g00004 Vium-Chr12626 3412 4939 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12626g00004 36 241 Calmodulin-binding Proteins AT2G36910 35.780 2.30e-31 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12626g00004 K02068 - gmx:100791365 404.445