Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12625g00002 ATGCATACAAAGACCAACATCAACCATACATTCTTATTTCCCATTATACCCCTCCTTGCAAAATATCCCAATGCCATTAATCCTAAATCTCACACCATTCGCCGGACCTGCCACGACTCTCCGATCTCCGCCCAGTGTCACGGCGGTCAGGGCATTCACGGCGACGATCGATTCCCGGAGGCCGGCGAGCCTCTACAAGTTCTCCGGATCAAGCAGAACGCGTCGGCGGTGGAGATAAAATCGGCGTACCGGAACCTGGCGAAGGTGTACCACCCTGATTCCGCGCTCCGGCGATCGGAATCGGACGAAAGGGACTTCATCGAGATCCACGACGCGTACCAGACGCTGTCGGATCCGTCGGCGAGAGCCGTGTACGATCTGTCGTTGACGGCGGCGCGTGGCGGTAGTGGCTCCTTCACTTCTTTGGTGGCCCCCGATGGGTCTTCCCGGTTGTACTACCAGACCCGCAAGTGGGAAAACGGATCAGTGCTGGTAGAAAAGATTAATTTTTTTTAA 516 0.5523 MHTKTNINHTFLFPIIPLLAKYPNAINPKSHTIRRTCHDSPISAQCHGGQGIHGDDRFPEAGEPLQVLRIKQNASAVEIKSAYRNLAKVYHPDSALRRSESDERDFIEIHDAYQTLSDPSARAVYDLSLTAARGGSGSFTSLVAPDGSSRLYYQTRKWENGSVLVEKINFF 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12625g00002 171 Gene3D DnaJ domain 60 140 IPR036869 -
Vium12625g00002 171 ProSitePatterns Nt-dnaJ domain signature. 106 125 IPR018253 -
Vium12625g00002 171 ProSiteProfiles dnaJ domain profile. 63 129 IPR001623 -
Vium12625g00002 171 Pfam DnaJ domain 66 126 IPR001623 -
Vium12625g00002 171 PANTHER CHAPERONE PROTEIN DNAJ 11, CHLOROPLASTIC-LIKE 55 160 - -
Vium12625g00002 171 SMART dnaj_3 62 121 IPR001623 -
Vium12625g00002 171 SUPERFAMILY Chaperone J-domain 64 139 IPR036869 -
Vium12625g00002 171 CDD DnaJ 63 118 IPR001623 -
Vium12625g00002 171 PRINTS DnaJ domain signature 65 83 IPR001623 -
Vium12625g00002 171 PRINTS DnaJ domain signature 83 98 IPR001623 -
Vium12625g00002 171 PRINTS DnaJ domain signature 101 121 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12625g00002 Vium-Chr12625 1589 2470 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12625g00002 66 126 C2H2 Transcription Factor Family AT1G74250 41.538 3.80e-07 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12625g00002 - - vum:124821529 350.517