Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1260g00003 ATGACTTTAAATCTTTGTGTATTGACCCCCAATCGAATTGTTTGGGATTCAGAAGTGAAGGAAATCATTTTACCTACTAATAGCGGACAAATTGGAGTATTACCTAATCATGCGCCTATTGCCTCAGCTGTCGATATAGGTATTTTGAGAATACGTCTTAAAGACCAATGGTTAACAATGGCTCTGATGGGGGGGTTTGCTAGAATAAATAATAATGAGATAACTGTTTTAGTAAATGATGCGGAAAAGGGTAGTGACATTGATCCACAAGAAGCACAGCAAACTCTTGAAATAGCAGAAACTAATTTGAATAAGGCTGAAGGCAAGAGACAAACAATTGAAGCAAATCTAGCTCTTAGACGAGCTAGAACACGAGTAGAGGCTATCAATGTTATTTCATAA 402 0.3706 MTLNLCVLTPNRIVWDSEVKEIILPTNSGQIGVLPNHAPIASAVDIGILRIRLKDQWLTMALMGGFARINNNEITVLVNDAEKGSDIDPQEAQQTLEIAETNLNKAEGKRQTIEANLALRRARTRVEAINVIS 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1260g00003 133 Gene3D - 1 87 IPR036771 -
Vium1260g00003 133 Pfam ATP synthase, Delta/Epsilon chain, beta-sandwich domain 3 81 IPR020546 GO:0015986
Vium1260g00003 133 NCBIfam ATP synthase F1 subunit epsilon 2 130 IPR001469 GO:0015986|GO:0045261|GO:0046933
Vium1260g00003 133 PANTHER ATP SYNTHASE DELTA/EPSILON CHAIN 3 130 IPR001469 GO:0015986|GO:0045261|GO:0046933
Vium1260g00003 133 SUPERFAMILY Epsilon subunit of F1F0-ATP synthase N-terminal domain 1 82 IPR036771 -
Vium1260g00003 133 Coils Coil 96 116 - -
Vium1260g00003 133 CDD F1-ATPase_delta 3 123 IPR001469 GO:0015986|GO:0045261|GO:0046933
Vium1260g00003 133 FunFam ATP synthase epsilon chain, chloroplastic 1 87 - -
Vium1260g00003 133 Pfam ATP synthase, Delta/Epsilon chain, long alpha-helix domain 86 129 IPR020547 -
Vium1260g00003 133 Hamap ATP synthase epsilon chain [atpC]. 1 128 IPR001469 GO:0015986|GO:0045261|GO:0046933
Vium1260g00003 133 Gene3D - 89 133 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1260g00003 18 109 Primary Pumps ATPases AT5G47030 33.000 3.00e-10 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1260g00003 K02114 - gmx:3989273 249.595