Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12604g00006 ATGGTGTCCTCAACCAGCTACAAGGAAGAAAGATCCTCAATAGTTTCTAGAAAGAGGGGGAATGGTGTTGATGAAGATGCAAAAATTAAAAAAGTAAAAGGACCAAAAGAAGAGCAACAAAGAGACAGCATGGATCATGTACATGCTTTTCACCCTCGAAGGGAGAACAAGATACCTTCTTATAAAAAGGGAAGCTGGAGCAAACTTATTGTGCTTATCTCTGGAGAAGGTTGGAAAGGTCAAAGTCGGGAGAAGATTAGGCCAGAAAAGGAGCTACTAAGAGCGAAAAAGCAGATTTTAAAATGTAAACTTAGTATTCGTGATGTTATACGCCAGCTGGATTCTCTTAGTTCTGTGGGTAGCATTGAAGATTCTGTCATTGCTCCAGATGGATCTGTTTATCATGAACATATATTCTGTGCGAATTGCAAACTACATGAAGCTTTCCCAGATAATGATATTATACTCTGTGATGGCACATGCAATCGGGCCTTTCACCAAAGATGTCTCAATCCTCCTTTGGATACTGAAAATATTCCTCCTGGAGATCAAGGCTGGTTTTGCAAGTTTTGTGAATGTAAGATAGAAATTATAGAGTCAACAAATGCCCATCTTGGGACTCAATTTTCCTTGGACAGTAGTTGGCAGGATGTATTTAAGGAAGAGGCTGCTGTGCCTGATGGTGATATTGCACTACTAAGTCCAGAAGAAGAATGGCCATCAGATGATCCTGAAGATGATGATTACAATCCAGAGAGGAAAGAAGACAGCCACAGCATAAATACAGAAGGTGCTGATGAAAATGCATCCAATGATTCAACCAGTTCTTTGAGTTTGTGGTCTTTGAATGAAGAATGTCCTCCTGCTGATGACGACCTTAGTCGACAATATTATTCTGTCAATAGCTTCATTGATTCTGATGAATCTGGGGAAATAGCATGTGGCCGTAGGCAGCGCAAAGCTGTTGACTACAAGAAACTGTATGATGAAATGTTTGGGAAGGATGCTCCACCTTGTGAACAACTGAGTGAAGATGAAGACTGGGGTCCTGGCAAAAGAAAGCGAAGAGAAAAGGAGTCTGATGCTGTTAATACTCTAATGACTCTGCATGAAAGTGAAAATAAACATCCCAATAATGAGAGTAGTGATAGAATAAGAGAGGGCTCTTCCGGCCTACAAATAAGAAGATCTTGTTTCAGAATTCCACTTGATGCAGTTGAGAAACTTCGGCAAGTTTTTGCAGAGAATGAGCTTCCTCCAAGATCCGTGAAGGAGGGTCTTTCAAAAGAGTTGGGACTAGATCCTGAAAAGGTTAGCAAATGGTTCAAAAATGCACGTTACTTGGCACTTAAAACCAGAAGGTATCAATCAGAAGGAGAACAGCTTCAGAGTTTCACATCTCAGATATCAAAACATTCTACATCTTCTAACATGGAGAAAGATGAGTTTCTGAAATCACAAGTCCCCAAAATTACTCTGATTCATTCCCAGAAGGATGGTCAAAGCATCACGGGCCAAGAGAAAAATAAATTATGCAACAGTCTTTTGAAGAGAAGGAAGCAAAAACCATCTCCACCTCTGTCAAGAGAAAACAGCAACAAGGAATCCATGGAGATGAGTGATGATGTTAATTTGAAGAAGCTTTTGAAAGAAAGGAAAAAAAGGGTAAATTTTATATATGGAGACTCTCAGATAGCAGAGTTGGAATTTGAAAGACTGAGCAAAGTGAAGAGTAAAGTAGATAGCATGAAGCAAAAACTAAATGAAGTTCAAAATTGCAGAGCTAAGGGATCAACAAATGAACCCTCTATTATATATGTTCCCACAGCCCAATTAAGGGAAAAGGTTGAGTAA 1854 0.3954 MVSSTSYKEERSSIVSRKRGNGVDEDAKIKKVKGPKEEQQRDSMDHVHAFHPRRENKIPSYKKGSWSKLIVLISGEGWKGQSREKIRPEKELLRAKKQILKCKLSIRDVIRQLDSLSSVGSIEDSVIAPDGSVYHEHIFCANCKLHEAFPDNDIILCDGTCNRAFHQRCLNPPLDTENIPPGDQGWFCKFCECKIEIIESTNAHLGTQFSLDSSWQDVFKEEAAVPDGDIALLSPEEEWPSDDPEDDDYNPERKEDSHSINTEGADENASNDSTSSLSLWSLNEECPPADDDLSRQYYSVNSFIDSDESGEIACGRRQRKAVDYKKLYDEMFGKDAPPCEQLSEDEDWGPGKRKRREKESDAVNTLMTLHESENKHPNNESSDRIREGSSGLQIRRSCFRIPLDAVEKLRQVFAENELPPRSVKEGLSKELGLDPEKVSKWFKNARYLALKTRRYQSEGEQLQSFTSQISKHSTSSNMEKDEFLKSQVPKITLIHSQKDGQSITGQEKNKLCNSLLKRRKQKPSPPLSRENSNKESMEMSDDVNLKKLLKERKKRVNFIYGDSQIAELEFERLSKVKSKVDSMKQKLNEVQNCRAKGSTNEPSIIYVPTAQLREKVE 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12604g00006 617 Gene3D - 394 483 - -
Vium12604g00006 617 MobiDBLite consensus disorder prediction 333 390 - -
Vium12604g00006 617 SUPERFAMILY FYVE/PHD zinc finger 131 196 IPR011011 -
Vium12604g00006 617 CDD homeodomain 400 447 IPR001356 GO:0003677
Vium12604g00006 617 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 67 615 - -
Vium12604g00006 617 ProSitePatterns Zinc finger PHD-type signature. 140 191 IPR019786 -
Vium12604g00006 617 ProSiteProfiles Zinc finger PHD-type profile. 137 194 IPR019787 -
Vium12604g00006 617 SUPERFAMILY Homeodomain-like 395 458 IPR009057 -
Vium12604g00006 617 MobiDBLite consensus disorder prediction 1 44 - -
Vium12604g00006 617 FunFam pathogenesis-related homeodomain protein 394 458 - -
Vium12604g00006 617 MobiDBLite consensus disorder prediction 515 541 - -
Vium12604g00006 617 Pfam PHD-finger 139 194 IPR019787 -
Vium12604g00006 617 Coils Coil 573 593 - -
Vium12604g00006 617 CDD PHD_PRHA_like 139 191 IPR045876 -
Vium12604g00006 617 ProSiteProfiles 'Homeobox' domain profile. 392 452 IPR001356 GO:0003677
Vium12604g00006 617 SMART PHD_3 139 192 IPR001965 -
Vium12604g00006 617 Pfam Homeodomain 405 447 IPR001356 GO:0003677
Vium12604g00006 617 MobiDBLite consensus disorder prediction 236 250 - -
Vium12604g00006 617 SMART HOX_1 394 456 IPR001356 GO:0003677
Vium12604g00006 617 MobiDBLite consensus disorder prediction 333 364 - -
Vium12604g00006 617 MobiDBLite consensus disorder prediction 11 44 - -
Vium12604g00006 617 MobiDBLite consensus disorder prediction 226 276 - -
Vium12604g00006 617 FunFam pathogenesis-related homeodomain protein-like 131 191 - -
Vium12604g00006 617 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 131 188 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12604g00006 Vium-Chr12604 45020 49999 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12604g00006 39 457 Homeobox Transcription Factor Family AT4G29940 54.206 1.40e-137 418
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Vium12604g00006 Homeodomain 6.4e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12604g00006 - - vum:124821518 1223.38