Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12604g00003 ATGCAACTGAAGCATGGAAGAAGCTTCATGGGAAGGAAGTGGTTGTTGAGTGCAAATTTGATGGCGACCGAATTCAAATTCATAAAAACGGAACTGAGATACATTTTTTCTCAAGGCAGGAACTTTATAGATCATTCTGAATATGCACATGCAATGTCAGATATCATAATACAAAATATTCTTGTAGATAGGTGTATCCTTGATGGTGAAATGTTGGTGTGGGACACATCCTCAAAACGCTTTGCTGAGTTTGGCTCAAATCAGGAAATAGCCAAGGCAGCAAGAGATGGACTTGATAGTGACAGACAGTTATGCTATGTTGCGTTTGATATCCTTTATTTTGGAGATACTAGTGTGATTCACCAATCTTTGAAGGAAAGACATGAGATTTTATGTAAAGTTGTTAGGCCAATGAAGGGACGGTTGGAAGTTTTGGTACCTAATGCTGGTATCAACAGTCATCTTACTTCAGGTGAACCTTGTTGGTCATTTATTGCTCATAAAGTTGATGAAGTTGAGAGGTTTTTCAAGGAAACCATTGAAAATAGAGATGAGGGAATTGTTTTAAAAGACCACAGCTCTAAATGGGAACCTAGTGATCGTAGTGGAAAGTGGCTAAAATTGAAGCCTGAATACATTCAAGCTGGCTCTGATTTGGATGTACTTATCATAGGTGGCTACTATGGTTCTGGACGACGCGGAGGACAGGTTGCTCAATTCTTGGTTGGCCTTGCAGAACGTCAATCACCAAATGCACAACCTATGCGGTTTATATCCTTTTGCAGAGTTGGCACTGGACTCTCTGATGAGGAGCTTGATGTTGTAATAACCAAATTAAAACCATACTTCAGAAAGTATGAATATCCAAAGAAGAGGCCACCAAGTTTTTATCAAGTAACTAATCATTCAAAAGAAAGACCTGATGTGTGGGTTGATAGCCCTGAGAAATCAATTATTCTGTCTATTACCAGTGATATCCGAACTATAGAATCTGAGGTATTTGCTGCACCTTACAGCCTGAGATTTCCTAGGATTGACAGGGTGAGATATGACAAAGCTTGGAACGAATGCCTTGATGTTCAATCATTTATAGAACTAGTGCATTCTAGCAATGGTACCACACAGAGGGATACAGAATATGGCAGCAAACAGGACAGTAAACCAAAAAGAATGAAATCCTCCACTAGGGGAGAAAAGAAAAACATGTCCATCGTTCCTTCTCATTTAATTCAAACTGATATTTCCAGCATTAAGGGGGGCTCCTTAATATTTTCAAATATGATGTTCTACTTTGCTAATGTGCCTTCATCGCATTCTCTTGAGTCCTTGCACAAAATAGTTGCTGAGAATGGGGGAACTTTTTCAATGAATTTGAACAACTCAGTCACACATTGTGTTGCCGCAGACAGCAAGGGCTTTAAATTTGAAGCAGCAAAGCGTCATGGTGATATCATTCATTATTCTTGGGTACTAGACTGTTATGAGCAAAAAAAGCTTGTCTGCTTACAGCCTAAGTACTTCCTTTTCCTATCTGAACTGACAAAGAAGAAGTTCCGAGAAGAAATTGATGAGTTCTCAGACTCTTTCTACATGGACCTAGATCTTGGAGACATCAAGCAGCTCTTAAGCAATATTAGTAAGTCTGAAGATGTCAGCACTGTCGATCATTACAGGAAAAAATACTGCCCAAAGGATAAGTGGTCTTTCTTTTGTGGATGTTCAATTTATTTCCACACTGCAACACCTTCATCGAACGGAGATTGGCATTATATATTACAACTTGCTTTGAGGAGATTCAAGCTTGAGGTTCTCATGGGTGGTGGAAAAGTTACCTCTAATCTTACTTCTGCAACCCATTTAGTGGCCTTTCTTGTGCCGGGATGTCTGACTGACTTTGAACAAATACTGAGTAGTTTCACTTCAGTAGAAAGGAAAATTCTCCGAAGCAAGAGGTTGTATATAGTTAATTCCCAGTGGTTGGAAGATTGTTCAGACAGTAGCCAAAGATTACCAGAAGACTCTTACAGTTTGAAGCCCTGGGGAATAGAAGAGACAACTGCTGAAGATTGTGGACAGGACTTGGCGTTAGAGGCTCATCAGTGTGGAGATAACACACAACACCAAAATACATCTTTCTCTGACAAGGGAAATCGGAAAAGAAGTGAACAAGTTGCATGCGAAGACAGTATGGCCTTCTTATCCCGAGAGAAGGGTGTCAAAAGGAAAAGAGGAAGACCTGTGGGCAGTGGCATAAAAAATGTAAAACCAACTGGCAAACAAACTCGAAGAGCACGACCACAAAATGTGAAAAAGCCTACTAAAATATGGGAATACGAATCATCGGATGAAAGTGATTCTCGTGACAAGCAGGAGATTGACACTAGAGCAGGAAGTCTTAACTTTTATAAGAAACATTCAGAACCCCAGGAGAATGAGGAACGGGAAAATGTCCAAGTTTCTAGGACAGTGGAAAGTTCTGAACAAAATAAGGTAGACAACAAGCTGGAGGACTTGAAGGACAATGATCATGAAAGAATGTTGATTCCTGAAATAGAAATGACTGATAGGTACAATGACCAAAAGAATGAGGTGGTAGAGAAATTAGACTTTTCTGCTGACCCCCTTCAGGCGATGTTATTTGACATGATTCCTACTCTTGGCACCCAAAAAGTTGAGCAACCTATGAATCTTAGTGTTAGAGAAGAGAAACTAGCAGAAACCTCCAATGCAGAAACAGAGCCTATAACTACAAAGAAAAACAAGGTTAGCTTCATGGATGCTGCCAATGAGCTGCTGAAGGACTGGTAG 2808 0.4003 MQLKHGRSFMGRKWLLSANLMATEFKFIKTELRYIFSQGRNFIDHSEYAHAMSDIIIQNILVDRCILDGEMLVWDTSSKRFAEFGSNQEIAKAARDGLDSDRQLCYVAFDILYFGDTSVIHQSLKERHEILCKVVRPMKGRLEVLVPNAGINSHLTSGEPCWSFIAHKVDEVERFFKETIENRDEGIVLKDHSSKWEPSDRSGKWLKLKPEYIQAGSDLDVLIIGGYYGSGRRGGQVAQFLVGLAERQSPNAQPMRFISFCRVGTGLSDEELDVVITKLKPYFRKYEYPKKRPPSFYQVTNHSKERPDVWVDSPEKSIILSITSDIRTIESEVFAAPYSLRFPRIDRVRYDKAWNECLDVQSFIELVHSSNGTTQRDTEYGSKQDSKPKRMKSSTRGEKKNMSIVPSHLIQTDISSIKGGSLIFSNMMFYFANVPSSHSLESLHKIVAENGGTFSMNLNNSVTHCVAADSKGFKFEAAKRHGDIIHYSWVLDCYEQKKLVCLQPKYFLFLSELTKKKFREEIDEFSDSFYMDLDLGDIKQLLSNISKSEDVSTVDHYRKKYCPKDKWSFFCGCSIYFHTATPSSNGDWHYILQLALRRFKLEVLMGGGKVTSNLTSATHLVAFLVPGCLTDFEQILSSFTSVERKILRSKRLYIVNSQWLEDCSDSSQRLPEDSYSLKPWGIEETTAEDCGQDLALEAHQCGDNTQHQNTSFSDKGNRKRSEQVACEDSMAFLSREKGVKRKRGRPVGSGIKNVKPTGKQTRRARPQNVKKPTKIWEYESSDESDSRDKQEIDTRAGSLNFYKKHSEPQENEERENVQVSRTVESSEQNKVDNKLEDLKDNDHERMLIPEIEMTDRYNDQKNEVVEKLDFSADPLQAMLFDMIPTLGTQKVEQPMNLSVREEKLAETSNAETEPITTKKNKVSFMDAANELLKDW 935
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12604g00003 935 Coils Coil 809 829 - -
Vium12604g00003 935 Gene3D DNA ligase/mRNA capping enzyme 26 211 - -
Vium12604g00003 935 CDD BRCT_DNA_ligase_IV_rpt1 423 509 - -
Vium12604g00003 935 ProSitePatterns ATP-dependent DNA ligase signature 2. 185 209 IPR016059 GO:0003909
Vium12604g00003 935 MobiDBLite consensus disorder prediction 380 397 - -
Vium12604g00003 935 MobiDBLite consensus disorder prediction 702 832 - -
Vium12604g00003 935 FunFam DNA ligase 212 373 - -
Vium12604g00003 935 Gene3D - 212 373 IPR012340 -
Vium12604g00003 935 Gene3D BRCT domain 565 677 IPR036420 -
Vium12604g00003 935 Pfam ATP dependent DNA ligase domain 62 209 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Vium12604g00003 935 Gene3D BRCT domain 432 548 IPR036420 -
Vium12604g00003 935 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 34 209 - -
Vium12604g00003 935 ProSiteProfiles ATP-dependent DNA ligase family profile. 97 246 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Vium12604g00003 935 ProSiteProfiles BRCT domain profile. 419 507 IPR001357 -
Vium12604g00003 935 Pfam DNA ligase IV 514 547 IPR021536 GO:0003910
Vium12604g00003 935 Pfam ATP dependent DNA ligase C terminal region 233 352 IPR012309 GO:0003910|GO:0006281|GO:0006310
Vium12604g00003 935 Pfam BRCT domain, a BRCA1 C-terminus domain 421 504 IPR001357 -
Vium12604g00003 935 SUPERFAMILY BRCT domain 559 679 IPR036420 -
Vium12604g00003 935 MobiDBLite consensus disorder prediction 373 400 - -
Vium12604g00003 935 SMART BRCT_7 421 497 IPR001357 -
Vium12604g00003 935 SUPERFAMILY Nucleic acid-binding proteins 217 368 IPR012340 -
Vium12604g00003 935 SUPERFAMILY BRCT domain 423 508 IPR036420 -
Vium12604g00003 935 MobiDBLite consensus disorder prediction 770 820 - -
Vium12604g00003 935 FunFam DNA ligase 434 548 - -
Vium12604g00003 935 ProSiteProfiles BRCT domain profile. 607 677 IPR001357 -
Vium12604g00003 935 PANTHER DNA LIGASE 4 40 927 IPR029710 GO:0003677|GO:0003910|GO:0005524|GO:0006281|GO:0051103
Vium12604g00003 935 CDD Adenylation_DNA_ligase_IV 31 214 IPR044125 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12604g00003 Vium-Chr12604 12964 26716 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12604g00003 40 369 Core DNA Replication Machinery Family AT1G08130 27.273 1.51e-24 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12604g00003 K10777 - gmx:100816002 1548.87