Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12604g00002 ATGGCGACGGAGCAAACCAAATTCAGCGTGTTGTGCAGCCTCTTTACGTGGACGCAGCGGAGCAAGTCGGCGGCGAAGAAGCGCTCCAAGTTCCGCAAGTTCCTCGACGCCTTCTGCATTGACCGCAACTTCTTCCCCGCTATTCGCCTCATTCTCCCCAACCTCGATCGCGAGCGCGGCTCCTATGGCCTCAAGGAGTCCGTTCTCGCCACCTCCCTCATCGACGCCCTCGGCATCTCCCGTGACTCCCCCGATGCCCTCCGACTCATCAATTGGCGTAAGGGAGGCGCCGCCACCGGCGCTACAGCAGGAAATTTCGCCCTCGTCGCCACCGAGGTGCTGCACCGCAGGCAAGGGACCGCTTCGGGAGGGTTGACGATAAGGGAGTTGAATGAGTTGCTTGACCGGTTGGCTTCCGGTGAAAACAGGGCTGAGAAAATTTTGGTTCTTTCTACCCTTATCCAAAAGACAAATGCACAGGAAATGAAGTGGATTATCATGATAATCCTGAAAGATCTAAAGCTGGGAATTAGTGAAAAAAGCATTTTTCATGAGTTCCATCCTGATGCAGAAGACTTGTTTAATGTTACCTGTGACTTAAAACTAGTATGTGAAAAGCTAAGGGATCGGAATCAGCGGCATAAACGGCAGGATATTGAAGTTGGGAAAGCTGTCCGCCCCCAATTAGCTAAGAGAGTTGCTAATGCAACTGAAGCATGGAAGAAGCTTCATGGGAAGGAAGTGGTTGTTGAGTGCAAATTTGATGGCGACCGAATTCAAATTCATAAAAACGGAACTGAGATACATTTTTTCTCAAGGAACTTTATAGATCATTCTGAATATGCACATGCAATGTCAGATATCATAATACAAAATATTCTTGTAGATAGGTGTATCCTTGATGGTGAAATGTTGGTGTGGGACACATCCTCAAAACGCTTTGCTGAGTTTGGCTCAAATCAGGAAATAGCCAAGGCAGCAAGAGATGGACTTGATAGTGACAGACAGTTATGCTATGTTGCGTTTGATATCCTTTATTTTGGAGATACTAGTGTGATTCACCAATCTTTGAAGGAAAGACATGAGATTTTATGTAAAGTTGTTAGGCCAATGAAGGGACGGTTGGAAGTTTTGGTACCTAATGCTGGTATCAACAGTCATCTTACTTCAGGTGAACCTTGTTGGTCATTTATTGCTCATAAAGTTGATGAAGTTGAGAGGTTTTTCAAGGAAACCATTGAAAATAGAGATGAGGGAATTGTTTTAAAAGACCACAGCTCTAAATGGGAACCTAGTGATCGTAGTGGAAAGTGGCTAAAATTGAAGCCTGAATACATTCAAGCTGGCTCTGATTTGGATGTACTTATCATAGGTGGCTACTATGGTTCTGGACGACGCGGAGGACAGGTTGCTCAATTCTTGGTTGGCCTTGCAGAACGTCAATCACCAAATGCACAACCTATGCGGTTTATATCCTTTTGCAGAGTTGGCACTGGACTCTCTGATGAGGAGCTTGATGTTGTAATAACCAAATTAAAACCATACTTCAGAAAGTATGAATATCCAAAGAAGAGGCCACCAAGTTTTTATCAAGTAACTAATCATTCAAAAGAAAGACCTGATGTGTGGGTTGATAGCCCTGAGAAATCAATTATTCTGTCTATTACCAGTGATATCCGAACTATAGAATCTGAGGTATTTGCTGCACCTTACAGCCTGAGATTTCCTAGGATTGACAGGGTGAGATATGACAAAGCTTGGAACGAATGCCTTGATGTTCAATCATTTATAGAACTAGTGCATTCTAGCAATGGTACCACACAGAGGGATACAGAATATGGCAGCAAACAGGACAGTAAACCAAAAAGAATGAAATCCTCCACTAGGGGAGAAAAGAAAAACATGTCCATCGTTCCTTCTCATTTAATTCAAACTGATATTTCCAGCATTAAGGGGGGCTCCTTAATATTTTCAAATATGATGTTCTACTTTGCTAATGTGCCTTCATCGCATTCTCTTGAGTCCTTGCACAAAATAGTTGCTGAGAATGGGGGAACTTTTTCAATGAATTTGAACAACTCAGTCACACATTGTGTTGCCGCAGACAGCAAGGGCTTTAAATTTGAAGCAGCAAAGCGTCATGGTGATATCATTCATTATTCTTGGGTACTAGACTGTTATGAGCAAAAAAAGCTTGTCTGCTTACAGCCTAAGTACTTCCTTTTCCTATCTGAACTGACAAAGAAGAAGTTCCGAGAAGAAATTGATGAGTTCTCAGACTCTTTCTACATGGACCTAGATCTTGGAGACATCAAGCAGCTCTTAAGCAATATTAGTAAGTCTGAAGATGTCAGCACTGTCGATCATTACAGGAAAAAATACTGCCCAAAGGATAAGTGGTCTTTCTTTTGTGGATGTTCAATTTATTTCCACACTGCAACACCTTCATCGAACGGAGATTGGCATTATATATTACAACTTGCTTTGAGGAGATTCAAGCTTGAGGTTCTCATGGGTGGTGGAAAAGTTACCTCTAATCTTACTTCTGCAACCCATTTAGTGGCCTTTCTTGTGCCGGGATGTCTGACTGACTTTGAACAAATACTGAGTAGTTTCACTTCAGTAGAAAGGAAAATTCTCCGAAGCAAGAGGTTGTATATAGTTAATTCCCAGTGGTTGGAAGATTGTTCAGACAGTAGCCAAAGATTACCAGAAGACTCTTACAGTTTGAAGCCCTGGGGAATAGAAGAGACAACTGCTGAAGATTGTGGACAGGACTTGGCGTTAGAGGCTCATCAGTGTGGAGATAACACACAACACCAAAATACATCTTTCTCTGACAAGGGAAATCGGAAAAGAAGTGAACAAGTTGCATGCGAAGACAGTATGGCCTTCTTATCCCGAGAGAAGGGTGTCAAAAGGAAAAGAGGAAGACCTGTGGGCAGTGGCATAAAAAATGTAAAACCAACTGGCAAACAAACTCGAAGAGCACGACCACAAAATGTGAAAAAGCCTACTAAAATATGGGAATACGAATCATCGGATGAAAGTGATTCTCGTGACAAGCAGGAGATTGACACTAGAGCAGGAAGTCTTAACTTTTATAAGAAACATTCAGAACCCCAGGAGAATGAGGAACGGGAAAATGTCCAAGTTTCTAGGACAGTGGAAAGTTCTGAACAAAATAAGGTAGACAACAAGCTGGAGGACTTGAAGGACAATGATCATGAAAGAATGTTGATTCCTGAAATAGAAATGACTGATAGGTACAATGACCAAAAGAATGAGGTGGTAGAGAAATTAGACTTTTCTGCTGACCCCCTTCAGGCGATGTTATTTGACATGATTCCTACTCTTGGCACCCAAAAAGTTGAGCAACCTATGAATCTTAGTGTTAGAGAAGAGAAACTAGCAGAAACCTCCAATGCAGAAACAGAGCCTATAACTACAAAGAAAAACAAGGTTAGCTTCATGGATGCTGCCAATGAGCTGCTGAAGGACTGGTAG 3507 0.4249 MATEQTKFSVLCSLFTWTQRSKSAAKKRSKFRKFLDAFCIDRNFFPAIRLILPNLDRERGSYGLKESVLATSLIDALGISRDSPDALRLINWRKGGAATGATAGNFALVATEVLHRRQGTASGGLTIRELNELLDRLASGENRAEKILVLSTLIQKTNAQEMKWIIMIILKDLKLGISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLRDRNQRHKRQDIEVGKAVRPQLAKRVANATEAWKKLHGKEVVVECKFDGDRIQIHKNGTEIHFFSRNFIDHSEYAHAMSDIIIQNILVDRCILDGEMLVWDTSSKRFAEFGSNQEIAKAARDGLDSDRQLCYVAFDILYFGDTSVIHQSLKERHEILCKVVRPMKGRLEVLVPNAGINSHLTSGEPCWSFIAHKVDEVERFFKETIENRDEGIVLKDHSSKWEPSDRSGKWLKLKPEYIQAGSDLDVLIIGGYYGSGRRGGQVAQFLVGLAERQSPNAQPMRFISFCRVGTGLSDEELDVVITKLKPYFRKYEYPKKRPPSFYQVTNHSKERPDVWVDSPEKSIILSITSDIRTIESEVFAAPYSLRFPRIDRVRYDKAWNECLDVQSFIELVHSSNGTTQRDTEYGSKQDSKPKRMKSSTRGEKKNMSIVPSHLIQTDISSIKGGSLIFSNMMFYFANVPSSHSLESLHKIVAENGGTFSMNLNNSVTHCVAADSKGFKFEAAKRHGDIIHYSWVLDCYEQKKLVCLQPKYFLFLSELTKKKFREEIDEFSDSFYMDLDLGDIKQLLSNISKSEDVSTVDHYRKKYCPKDKWSFFCGCSIYFHTATPSSNGDWHYILQLALRRFKLEVLMGGGKVTSNLTSATHLVAFLVPGCLTDFEQILSSFTSVERKILRSKRLYIVNSQWLEDCSDSSQRLPEDSYSLKPWGIEETTAEDCGQDLALEAHQCGDNTQHQNTSFSDKGNRKRSEQVACEDSMAFLSREKGVKRKRGRPVGSGIKNVKPTGKQTRRARPQNVKKPTKIWEYESSDESDSRDKQEIDTRAGSLNFYKKHSEPQENEERENVQVSRTVESSEQNKVDNKLEDLKDNDHERMLIPEIEMTDRYNDQKNEVVEKLDFSADPLQAMLFDMIPTLGTQKVEQPMNLSVREEKLAETSNAETEPITTKKNKVSFMDAANELLKDW 1168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12604g00002 1168 ProSiteProfiles ATP-dependent DNA ligase family profile. 330 479 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Vium12604g00002 1168 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 186 443 - -
Vium12604g00002 1168 SUPERFAMILY BRCT domain 792 912 IPR036420 -
Vium12604g00002 1168 Gene3D - 445 606 IPR012340 -
Vium12604g00002 1168 FunFam DNA ligase 221 444 - -
Vium12604g00002 1168 Pfam ATP dependent DNA ligase domain 227 442 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Vium12604g00002 1168 MobiDBLite consensus disorder prediction 1003 1053 - -
Vium12604g00002 1168 FunFam DNA ligase 667 781 - -
Vium12604g00002 1168 Pfam ATP dependent DNA ligase C terminal region 466 585 IPR012309 GO:0003910|GO:0006281|GO:0006310
Vium12604g00002 1168 ProSiteProfiles BRCT domain profile. 840 910 IPR001357 -
Vium12604g00002 1168 Pfam BRCT domain, a BRCA1 C-terminus domain 654 737 IPR001357 -
Vium12604g00002 1168 Gene3D BRCT domain 665 781 IPR036420 -
Vium12604g00002 1168 FunFam DNA ligase 445 606 - -
Vium12604g00002 1168 PANTHER DNA LIGASE 4 4 1160 IPR029710 GO:0003677|GO:0003910|GO:0005524|GO:0006281|GO:0051103
Vium12604g00002 1168 Coils Coil 1042 1062 - -
Vium12604g00002 1168 Pfam DNA ligase N terminus 7 187 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Vium12604g00002 1168 CDD BRCT_DNA_ligase_IV_rpt1 656 742 - -
Vium12604g00002 1168 Pfam DNA ligase IV 747 780 IPR021536 GO:0003910
Vium12604g00002 1168 MobiDBLite consensus disorder prediction 935 1065 - -
Vium12604g00002 1168 MobiDBLite consensus disorder prediction 613 630 - -
Vium12604g00002 1168 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 251 259 IPR016059 GO:0003909
Vium12604g00002 1168 Gene3D DNA ligase/mRNA capping enzyme 221 444 - -
Vium12604g00002 1168 Gene3D - 1 219 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Vium12604g00002 1168 CDD Adenylation_DNA_ligase_IV 215 447 IPR044125 GO:0005524
Vium12604g00002 1168 NCBIfam ATP-dependent DNA ligase 62 600 IPR000977 GO:0003910|GO:0005524|GO:0071897
Vium12604g00002 1168 SUPERFAMILY Nucleic acid-binding proteins 450 601 IPR012340 -
Vium12604g00002 1168 FunFam DNA ligase 2 219 - -
Vium12604g00002 1168 SUPERFAMILY BRCT domain 656 741 IPR036420 -
Vium12604g00002 1168 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 6 210 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Vium12604g00002 1168 ProSiteProfiles BRCT domain profile. 652 740 IPR001357 -
Vium12604g00002 1168 Gene3D BRCT domain 798 910 IPR036420 -
Vium12604g00002 1168 ProSitePatterns ATP-dependent DNA ligase signature 2. 418 442 IPR016059 GO:0003909
Vium12604g00002 1168 MobiDBLite consensus disorder prediction 606 633 - -
Vium12604g00002 1168 SMART BRCT_7 654 730 IPR001357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12604g00002 Vium-Chr12604 12964 27697 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12604g00002 215 602 Core DNA Replication Machinery Family AT1G08130 27.970 1.37e-30 128
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12604g00002 K10777 - gmx:100816002 2050.4