Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12604g00001 ATGGAGAATATTGGTGAAGAGTACAAGCATTACTGGGAGACCACCATGTTCCTCCAGACCCAAGAGCTTGACAGTAATTGGGGGTTCGAGGAGGCTTTTTCAGGCTACTACGATTCCAGTTCCCCTGATGGTGCTGCTTCATCTGCAGCATCTAAGAACATTGTTTCAGAGAGGAATAGGAGGAAGAAGCTCAATGAAAGGCTTTTCGCGCTTAGATCGGTGGTTCCTAATATCAGCAAGATGGATAAGGCTTCAATTATTAAGGATGCTATTGACTACATCCAGCATTTGCACGAGCAAGAGAAGATAATCCAAGCTGAGATCATGAATCTTGAATCTGGGATGCCAAACAAGAGTAGTTCGAGCTATGACTTTGAGCAGGAACAGCTTCCTGTGGTGCTGAGGTCCAAGAAGAAGAGAACCGAGCAGATATACGATTCAGTCATTTCAAGAAACTCCCCAATTGAAGTCCTTGATCTGAGCGTGACCTACATGGGGGAGAAAATTGCCGTGGTGAGTTTGACATGCAGCAAAAGGACAGACACAATGGTGAAACTGTGCGAGGTGTTCGAATCTTTGAAGCTCAAGATCATCACTGCTAACATAACTTCGTTTTCAGGGAGGCTTCTGAAAACAGTCTTCATCGAGGCCAATGGAGAAGATAAGTATCATTTGGAGATAAAGATCCAGACAGCCATTGCAGCTCTTAACGAACCTCTGAGTCCCATGAGCATTTAA 738 0.4458 MENIGEEYKHYWETTMFLQTQELDSNWGFEEAFSGYYDSSSPDGAASSAASKNIVSERNRRKKLNERLFALRSVVPNISKMDKASIIKDAIDYIQHLHEQEKIIQAEIMNLESGMPNKSSSSYDFEQEQLPVVLRSKKKRTEQIYDSVISRNSPIEVLDLSVTYMGEKIAVVSLTCSKRTDTMVKLCEVFESLKLKIITANITSFSGRLLKTVFIEANGEDKYHLEIKIQTAIAALNEPLSPMSI 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12604g00001 245 Gene3D - 45 114 IPR036638 GO:0046983
Vium12604g00001 245 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 42 228 - -
Vium12604g00001 245 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 48 97 IPR011598 GO:0046983
Vium12604g00001 245 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 49 113 IPR036638 GO:0046983
Vium12604g00001 245 SMART finulus 54 103 IPR011598 GO:0046983
Vium12604g00001 245 Pfam Helix-loop-helix DNA-binding domain 55 98 IPR011598 GO:0046983
Vium12604g00001 245 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 44 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12604g00001 Vium-Chr12604 1683 8061 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12604g00001 1 216 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G57150 61.468 3.70e-84 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium12604g00001 HLH 2.3e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12604g00001 - - vun:114163278 461.455