Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1259g00005 ATGCCAATGGAGGATTCCGAGGGAGTCCTCAGCTTCGATTTCGAGGGTGGCCTCGACACCGCTCCCTCCGCCGCCGCCGCTCCCTCTGGTCCACTCGTCCAACATGACTCCTCCGCTGCCGCTTCCGCCGTTTCCAATGGAGGCCCTCCCGCCCCGGCCCCCTCCGCAGCCGACCCCGCATCCGTCAACGTTCCCGGCCGACGGAGCTTCCGGCAGACGGTATGCCGGCACTGGCTGCGCAGCCTGTGCATGAAGGGCGACGCGTGCGGGTTTCTGCACCAGTACGACAAGGCGCGGATGCCTGTTTGTCGATTCTTCAGGCTCTATGGAGAGTGTCGGGAACAGGATTGCGTGTATAAACACACGAATGAAGACATCAAGGAGTGTAACATGTACAAGTTGGGATTTTGTCCTAATGGGCCTGATTGCCGATATAGGCATGCAAAATCTCCTGGACCTCCACCTCCTGTTGAAGAGGTCCTTCAGAAGATCCAACATTTATATTCCTACAATTATAATTCATCTAACAAATTTTTCCAACAAAGGGGTTCCAGCTATGCCCAACAAGCTGAAAAATCCCAACTTCCTCAAGGAACAAACTCTACAAATCAAGTGGTGACTGGAAAACCATTGCCAGCAGAGTCAGGAAATGCCCAGCCACAGCAACAAGTTCAACAGTCTCAGCAGCAGGTCAGCCAGAGCCAAATGCAAAATGTTGCTAATGGCCAGCCTAATCAAGCCAGTAGATCTGCTACCCCTTTACCTCAAGGAATATCTAGGTATTTTATTGTTAAAAGTTGCAATCGTGAAAATTTGGAGTTATCTGTACAACAAGGAGTATGGGCAACTCAAAGGAGCAATGAGTCCAAACTAAATGAAGCATTTGACTCTGTGGAAAATGTGATATTGATTTTCTCAGTCAACCGTACTAGACATTTCCAGGGTTGTGCAAAGATGACATCCAGAATTGGTGGTTCTGTTGCTGGGGGTAACTGGAAATATGCTCATGGAACTGCACATTATGGGCGAAACTTCTCAGTTAAATGGTTGAAGTTATGTGAATTGTCTTTCCACAAAACTCGCCATTTAAGGAATCCATACAATGAGAACTTACCAGTGAAGATAAGTAGAGATTGTCAAGAGCTGGAGCCCTCTATTGGAGAGCAACTGGCATCATTGCTTTATCTTGAGCCAGATGGTGAACTTATGGCCGTTTCAGTTGCAGCCGAGTCTAAACGGGAAGAAGAAAAAGCAAAGGGAGTGAATCCAGATAATGGAGGAGAAAATCCAGATATTGTTCCATTTGAAGACAATGAAGAAGAGGAAGAGGAAGAAAGTGATGAAGAGGAGGAGAGCTTTGGTCATGGTGTAGGGCCAGCTGGTCAAGGCAGGGGTAGGGGCAGAGGTATGATGTGGCCACCTCACATGCCCCTTGGGCGTGGAGCCCGACCCATACCTGGAATGCAGGGCTTTAACCCTGTAATGATGGGTGATGGGTTATCCTATGGGCCAGTTGCACCTGATGGTTTTGGTATGCCAGATCTTTTTGGTGTGGGACCCCGTGCTTTTGCACCATACGGTCCCAGGTTCTCTGGTGATTTTGGAGGTCCTCCAGCAGCCATGATGTTTCGAGGACGACCTTCTCAACCAGGGATGTTTCCAGGTGGTGGTTTTGGGATGATGATGAATCCTGGACGTGGTCCCTTCATGGGGGGGATGGGGGTTGCAGGGGCAAATCCGCCAAGAGGTGGTAGGCCGGTTAATATGCCTCCAATGTTTCCACCACCTCCACCCCTACCTCAGAACACAAACCGTCTTGCCAAAAGAGATCAAAGAGCTACTGATAGAAATGATAGGTATGGTTCTGGATCAGAGCAGGGTAAGAGTCAAGACATGCTCAGTCAAAGTGGTGCACCTGATGATGACACGCAGTATCAGCAAGGATACAAAGCCAACCAGGATGATCATCCTGCTGTCAACAACTTCCGGAATGATGACAGTGAAAGCGAGGATGAAGCACCTAGGAGGTCAAGACATGGAGAGGGGAAAAAGAAAAGGCGGGGCCCAGAAGATGTCAATACAAACTATAATCATTAG 2097 0.4921 MPMEDSEGVLSFDFEGGLDTAPSAAAAPSGPLVQHDSSAAASAVSNGGPPAPAPSAADPASVNVPGRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKARMPVCRFFRLYGECREQDCVYKHTNEDIKECNMYKLGFCPNGPDCRYRHAKSPGPPPPVEEVLQKIQHLYSYNYNSSNKFFQQRGSSYAQQAEKSQLPQGTNSTNQVVTGKPLPAESGNAQPQQQVQQSQQQVSQSQMQNVANGQPNQASRSATPLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNESKLNEAFDSVENVILIFSVNRTRHFQGCAKMTSRIGGSVAGGNWKYAHGTAHYGRNFSVKWLKLCELSFHKTRHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGELMAVSVAAESKREEEKAKGVNPDNGGENPDIVPFEDNEEEEEEESDEEEESFGHGVGPAGQGRGRGRGMMWPPHMPLGRGARPIPGMQGFNPVMMGDGLSYGPVAPDGFGMPDLFGVGPRAFAPYGPRFSGDFGGPPAAMMFRGRPSQPGMFPGGGFGMMMNPGRGPFMGGMGVAGANPPRGGRPVNMPPMFPPPPPLPQNTNRLAKRDQRATDRNDRYGSGSEQGKSQDMLSQSGAPDDDTQYQQGYKANQDDHPAVNNFRNDDSESEDEAPRRSRHGEGKKKRRGPEDVNTNYNH 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1259g00005 698 ProSiteProfiles YTH domain profile. 259 394 IPR007275 GO:0003723
Vium1259g00005 698 MobiDBLite consensus disorder prediction 608 622 - -
Vium1259g00005 698 MobiDBLite consensus disorder prediction 659 692 - -
Vium1259g00005 698 ProSiteProfiles Zinc finger C3H1-type profile. 69 96 IPR000571 GO:0046872
Vium1259g00005 698 SMART c3hfinal6 125 149 IPR000571 GO:0046872
Vium1259g00005 698 SMART c3hfinal6 69 95 IPR000571 GO:0046872
Vium1259g00005 698 SMART c3hfinal6 97 123 IPR000571 GO:0046872
Vium1259g00005 698 MobiDBLite consensus disorder prediction 21 64 - -
Vium1259g00005 698 MobiDBLite consensus disorder prediction 408 422 - -
Vium1259g00005 698 ProSiteProfiles Zinc finger C3H1-type profile. 123 150 IPR000571 GO:0046872
Vium1259g00005 698 MobiDBLite consensus disorder prediction 183 253 - -
Vium1259g00005 698 SUPERFAMILY CCCH zinc finger 69 100 IPR036855 GO:0046872
Vium1259g00005 698 Gene3D - 64 127 - -
Vium1259g00005 698 MobiDBLite consensus disorder prediction 572 698 - -
Vium1259g00005 698 FunFam Cleavage and polyadenylation specificity factor 30 kDa subunit 64 125 - -
Vium1259g00005 698 MobiDBLite consensus disorder prediction 433 451 - -
Vium1259g00005 698 PANTHER YTH YT521-B HOMOLOGY DOMAIN-CONTAINING 37 681 IPR045168 -
Vium1259g00005 698 MobiDBLite consensus disorder prediction 584 602 - -
Vium1259g00005 698 Gene3D ph1033 like domains 237 397 - -
Vium1259g00005 698 MobiDBLite consensus disorder prediction 408 472 - -
Vium1259g00005 698 Pfam YT521-B-like domain 259 321 IPR007275 GO:0003723
Vium1259g00005 698 Pfam YT521-B-like domain 338 393 IPR007275 GO:0003723
Vium1259g00005 698 MobiDBLite consensus disorder prediction 623 658 - -
Vium1259g00005 698 CDD YTH 260 394 IPR007275 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1259g00005 Vium-Chr1259 44432 55367 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vium1259g00005 YTH 3.7e-45 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1259g00005 K14404 - gmx:100802826 1161.36