Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1259g00004 ATGGGTTGTATGCGTATATCAGTAGTAGCAGTGTTGTGTGCATTAGTGATGCATGGAGTGTCATGTGCAGATTTGAGTTCAACTTACTACGACACAACATGCCCTCTGCTATATTCCATTGTCTATGGAGTCATCAACCACACTTACATCACTGATCCCCGCATTGCTGCCAACCTCATCAGGCTTCATTTTCATGATTGCTTTGTTCAAGGTTGCGATGGATCAGTTTTGCTGAACAACAGCGATACTATAGAAAGCGAACAAGATGCAACTCCAAATCTCAATTCACTAAGGGGTTTTGATGTGGTGAATAACATCAAAACAGCGGTGGAAGATAGTTGTCCAGAGACAGTTTCTTGTGCTGATATTTTGGCTATTGCAGCTGAAGTAGGTTCTGTTCTGGGAGGAGGTCCATCATGGCCAGTTCTACTAGGAAGAAGGGATAGCTTAACAGCAAACAAAACCCTTGCTGAAACAAACCTTCCAGCACCACACTTCACAGTTTATCAACTTCAACAATCTTTTGCTGCTCAAGGTCTCAACACCACTGATTTAGTTTCACTCTCAGGTGCACATACGTTTGGACAAGCACACTGCAAAAATTTCATCAACAGATTATACAATTTCAACTACACTGGAAGTGCTGATCCAACTCTGAATAGAACTTACTTGGAAGCATTGAGTAAGAAATGCCCAGTAGATGCTACTGAGGATAACCTCGCCGATTTGGATCTGATCACTCCTAATCAATTCGATAACAAATACTACTCCAATCTTCAGTACCAGAATGGCCTGCTTCAGAGCGACCAAGAACTCTTCTCCAGTTCAGATGCCGATACCATTGACCTTGTGAATAGCTTCAGCAGTGACCAAAGTGTTTTCTTTGAGAACTTTGTAGTTTCAATGATAAAAATGGGTAGTATTTCAGTGCTGACAGAAGATGAAGGAGAAATTCGGTTGCAGTGTAATTTGGTGAATGAAGACTCATCTGGTTTAGTTGGTGTGGCATCCAAGGCTCCAAAACAGAAGCTCGCAGCATAG 1041 0.4207 MGCMRISVVAVLCALVMHGVSCADLSSTYYDTTCPLLYSIVYGVINHTYITDPRIAANLIRLHFHDCFVQGCDGSVLLNNSDTIESEQDATPNLNSLRGFDVVNNIKTAVEDSCPETVSCADILAIAAEVGSVLGGGPSWPVLLGRRDSLTANKTLAETNLPAPHFTVYQLQQSFAAQGLNTTDLVSLSGAHTFGQAHCKNFINRLYNFNYTGSADPTLNRTYLEALSKKCPVDATEDNLADLDLITPNQFDNKYYSNLQYQNGLLQSDQELFSSSDADTIDLVNSFSSDQSVFFENFVVSMIKMGSISVLTEDEGEIRLQCNLVNEDSSGLVGVASKAPKQKLAA 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1259g00004 346 ProSiteProfiles Plant heme peroxidase family profile. 24 326 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium1259g00004 346 FunFam Peroxidase 28 174 - -
Vium1259g00004 346 PANTHER PEROXIDASE 72-RELATED 22 324 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium1259g00004 346 CDD secretory_peroxidase 25 325 IPR033905 GO:0004601|GO:0042744
Vium1259g00004 346 Gene3D - 29 326 - -
Vium1259g00004 346 SUPERFAMILY Heme-dependent peroxidases 25 326 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vium1259g00004 346 PRINTS Plant peroxidase signature 258 275 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium1259g00004 346 PRINTS Plant peroxidase signature 300 313 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium1259g00004 346 PRINTS Plant peroxidase signature 58 78 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium1259g00004 346 PRINTS Plant peroxidase signature 136 151 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium1259g00004 346 PRINTS Plant peroxidase signature 117 127 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium1259g00004 346 PRINTS Plant peroxidase signature 242 257 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium1259g00004 346 PRINTS Plant peroxidase signature 34 53 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium1259g00004 346 PRINTS Plant peroxidase signature 98 111 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium1259g00004 346 PRINTS Plant peroxidase signature 183 195 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium1259g00004 346 PRINTS Haem peroxidase superfamily signature 118 135 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium1259g00004 346 PRINTS Haem peroxidase superfamily signature 136 148 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium1259g00004 346 PRINTS Haem peroxidase superfamily signature 184 199 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium1259g00004 346 PRINTS Haem peroxidase superfamily signature 244 259 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium1259g00004 346 PRINTS Haem peroxidase superfamily signature 56 70 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium1259g00004 346 ProSitePatterns Peroxidases active site signature. 56 67 IPR019794 GO:0004601
Vium1259g00004 346 FunFam Peroxidase 162 305 - -
Vium1259g00004 346 Gene3D Peroxidase, domain 2 162 305 - -
Vium1259g00004 346 ProSitePatterns Peroxidases proximal heme-ligand signature. 184 194 IPR019793 -
Vium1259g00004 346 Pfam Peroxidase 45 289 IPR002016 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1259g00004 Vium-Chr1259 38933 40949 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1259g00004 2 330 Peroxidase AT5G06730 54.103 6.51e-126 363
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1259g00004 K00430 - vra:106774868 652.129