Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12592g00001 ATGAAGTGGGAAACTGTAGCCCTTTCTCCTACACCTTGTTCTCCAAACTCCAACACCAATTGGTTGCTGGAAAATAACAGGAGCACAAAATGGACTCCTGAAGAGAACAAACTCTTTGAAAATGCTCTTGCAGTGCATGATAAAGATACTCCAGATCGGTGGCACAAAGTGGCTGAAATGATTCCTGGAAAGACAGTACTTGATGTGATCAAGCAGTACAAAGAACTTGAAATTGATGTTAGCAATATAGAAGCTGGGTTAATCCCTGTTCCTGGTTATAGCACTGCTACTTCACCCTTCACCTTAGATTGGGTGAACAGTCCTGGTTATGATGGGTTCAAAGGAAGTGGAAAGAGATCATCCTCAGCGAGACCTCATGAGCAGGAAAGGAAGAAAGGAGTGCCTTGGACTGAAGATGAACATAAATTGTTTTTACTGGGTCTGAAGAAATATGGGAAAGGTGATTGGAGAAATATTTCTCGCAATTTTGTGATCTCTAGAACCCCAACACAAGTGGCTAGCCATGCTCAGAAGTACTTCATAAGGCAACTTTCAGGAGGCAAAGACAAGAGAAGGGCCAGCATACATGACATAACAACAGTGAATCTGACAGAAACATCCACAACTTCTTCAGAAGACACCAACAGATCCACCTCACCACATGTGCTCTCACAGCAGCAGCAGCAGCAGCAGCAGCCAAATTCTACTCCAACTACACCCACAACTCATTTTCAGTGGAGTAATCAGTCAAGCACAGGAATAGCTATGACTTTCAACCCTGCTCATGAAAGAGTCTTCATGTCTCCTTATGGTGCTAACTCCTTTGGGGTTAAAATGGAAGCACAGAATCTGCATAACGAGTCTTCTTACTTGGGACCTCAGACGCAGAACATTGTTTTCCAAATGCAACAGTCCTCACAACACTAG 927 0.4347 MKWETVALSPTPCSPNSNTNWLLENNRSTKWTPEENKLFENALAVHDKDTPDRWHKVAEMIPGKTVLDVIKQYKELEIDVSNIEAGLIPVPGYSTATSPFTLDWVNSPGYDGFKGSGKRSSSARPHEQERKKGVPWTEDEHKLFLLGLKKYGKGDWRNISRNFVISRTPTQVASHAQKYFIRQLSGGKDKRRASIHDITTVNLTETSTTSSEDTNRSTSPHVLSQQQQQQQQPNSTPTTPTTHFQWSNQSSTGIAMTFNPAHERVFMSPYGANSFGVKMEAQNLHNESSYLGPQTQNIVFQMQQSSQH 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12592g00001 308 CDD SANT 30 76 IPR001005 -
Vium12592g00001 308 MobiDBLite consensus disorder prediction 120 135 - -
Vium12592g00001 308 ProSiteProfiles SANT domain profile. 136 184 IPR017884 -
Vium12592g00001 308 Pfam Myb-like DNA-binding domain 135 180 IPR001005 -
Vium12592g00001 308 Pfam Myb-like DNA-binding domain 30 74 IPR001005 -
Vium12592g00001 308 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 128 184 IPR017930 -
Vium12592g00001 308 ProSiteProfiles Myb-like domain profile. 128 180 IPR001005 -
Vium12592g00001 308 MobiDBLite consensus disorder prediction 204 244 - -
Vium12592g00001 308 FunFam Transcription factor SRM1 23 90 - -
Vium12592g00001 308 Gene3D - 134 184 - -
Vium12592g00001 308 ProSiteProfiles SANT domain profile. 26 81 IPR017884 -
Vium12592g00001 308 Gene3D - 23 90 - -
Vium12592g00001 308 CDD SANT 135 180 IPR001005 -
Vium12592g00001 308 MobiDBLite consensus disorder prediction 113 135 - -
Vium12592g00001 308 SUPERFAMILY Homeodomain-like 27 76 IPR009057 -
Vium12592g00001 308 SUPERFAMILY Homeodomain-like 129 183 IPR009057 -
Vium12592g00001 308 NCBIfam myb-like DNA-binding domain, SHAQKYF class 131 183 IPR006447 GO:0003677
Vium12592g00001 308 FunFam transcription factor MYB1R1 134 185 - -
Vium12592g00001 308 ProSiteProfiles Myb-like domain profile. 23 77 IPR001005 -
Vium12592g00001 308 SMART sant 27 79 IPR001005 -
Vium12592g00001 308 SMART sant 132 182 IPR001005 -
Vium12592g00001 308 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 25 256 IPR043363 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12592g00001 Vium-Chr12592 19343 21650 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vium12592g00001 Myb_DNA-binding 1e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12592g00001 - - gmx:778034 519.235