Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12581g00013 ATGAATTCTACAGAGAAAGTCACTCCAAGAAAAAGAGCATCCAAGAGTAGCACACCGAAGAAGAAGAATAGCACACCGAAAAAGAATAGCACGCCAAAGAGGAAGAGCACGCCGAATAAAACACCTAACAAAACTAAATCAGCTGTTTCTTCACCAGTGTCTGCTCAGAAGATTGATCTGAGGTTGGAGGCAAAGCTGTCTGCGGAGATTGATGCGAAGGTGTACGCTGGGCGGAGAATACATCCCTTTTTTTCCTTGTGGAAGGAGGAAAATGAACAACGCCGACAAGCATTATTGGCTAGGAGGAAAGCAAAAAGAATTAGTGAGTCCATCCATGTATTTGAAGATGTTAAGGATAATGCCTCACCCATTGACTGGAGTGACTGGACATTTTTGGATAATACCACAGTTGCATATTTGGATAGTCAGAATTCAAATTTATCTTTTATGGAGGATTCGGTTGAATCCTTAAATTTTGATAACATACATAGTGCGTCTGAAGAGGATGTCATGGATTGTCCAAGTCAACTTTCTATACAGTCAGATAATAAGCTGGACATATCACTACCAAATTCAGAAGTTAAATGTCTTTTGAAGACCGAAGATGTCGATGTGGACCTGAACTTGGAGGTCAATGAAAATACAGGATACAAGGATATTTTCACAGAGCAGGAACCACAAGCAAGAATAAGGTCTTACCATAATTGTGAAGGTAACAACAGCTTATGGATAGACAAGTACAAGCCAAAGAAAGCTTTTGAGGTGTGTGGTAATGAAGAGGCTATGAATTCCTTGCGTGACTGGTTACATCTTTGGCATAAAAGACTTTCTCAGTGCAAAAAAAGTTCTTGTAGCAAGGGTCGAAGTGATAGAGAAGATGCTTCAGAAGATATCGATCAGGGTCCTCTGCAGAGTGTTCTCTTGATTACAGGACCAATTGGGAGTGGCAAGTCTGCAGCTGTGTATGCCTGTGCCCAAGAACAAGGGTTTAAAGTTGTAGAGATCAATGCATCAAGTTGTCGAAACGGAGCTGCTATCACTGTTATCAAGAATAAAATAGAAGAACCTGGTGCCGGCAAAATCACAAGTTGTTTCAAACCTGTGAAGTTGCTTCCTGTTGATGAAGTCCACCAAACTTTAATTCTAGTTGAGGATGTGGACATCATTTTCCCTCAAGATCGTGGTTGTATTACTGCCATACAACAACAATTTTCGGCCACAAAAAAATGGCCTATTATATTTACCAGCAATAGAAATAATGGTGGCTTACCAAAAAGTTTTGCAAGACTAGATGTCTCTTTCTCATTTCCGTTGCCAGATGAGTTATTTTGCCATATATACAAGGTTTGCATGACAGAAGAAGTCAATATTAATCCTCTCCTATTGAAAAAAATTATCCAGTCTTGTGATGGAGATATTCGGAATACTATTATGCAACTTCAGTTCTGGTTCCAGAGTAAAACGTATACTGAAGGTGTATTACAAAGCCCTTTTGTTGCATGTCTCCATGCTTTTAGCTGCTCAAATTTGAACTTAAATGTGTGCATTGATTGCTCTCATATTAAGGCATATTCGTGTTAG 1581 0.3947 MNSTEKVTPRKRASKSSTPKKKNSTPKKNSTPKRKSTPNKTPNKTKSAVSSPVSAQKIDLRLEAKLSAEIDAKVYAGRRIHPFFSLWKEENEQRRQALLARRKAKRISESIHVFEDVKDNASPIDWSDWTFLDNTTVAYLDSQNSNLSFMEDSVESLNFDNIHSASEEDVMDCPSQLSIQSDNKLDISLPNSEVKCLLKTEDVDVDLNLEVNENTGYKDIFTEQEPQARIRSYHNCEGNNSLWIDKYKPKKAFEVCGNEEAMNSLRDWLHLWHKRLSQCKKSSCSKGRSDREDASEDIDQGPLQSVLLITGPIGSGKSAAVYACAQEQGFKVVEINASSCRNGAAITVIKNKIEEPGAGKITSCFKPVKLLPVDEVHQTLILVEDVDIIFPQDRGCITAIQQQFSATKKWPIIFTSNRNNGGLPKSFARLDVSFSFPLPDELFCHIYKVCMTEEVNINPLLLKKIIQSCDGDIRNTIMQLQFWFQSKTYTEGVLQSPFVACLHAFSCSNLNLNVCIDCSHIKAYSC 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12581g00013 526 SMART AAA_5 303 440 IPR003593 GO:0016887
Vium12581g00013 526 MobiDBLite consensus disorder prediction 30 54 - -
Vium12581g00013 526 MobiDBLite consensus disorder prediction 13 29 - -
Vium12581g00013 526 MobiDBLite consensus disorder prediction 1 54 - -
Vium12581g00013 526 Gene3D - 240 436 IPR027417 -
Vium12581g00013 526 Gene3D - 440 495 - -
Vium12581g00013 526 PANTHER CELL CYCLE CHECKPOINT PROTEIN RAD17 4 487 IPR004582 GO:0006281
Vium12581g00013 526 FunFam p-loop containing nucleoside triphosphate hydrolase superfamily protein 439 497 - -
Vium12581g00013 526 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 241 485 IPR027417 -
Vium12581g00013 526 Pfam ATPase family associated with various cellular activities (AAA) 307 437 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12581g00013 Vium-Chr12581 135971 142016 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12581g00013 243 519 Core DNA Replication Machinery Family AT5G22010 25.329 6.13e-16 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12581g00013 K26118 - vum:124821504 1022.31