Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12581g00006 ATGGCTCACAATCACAACTCCACCGATTCTCCTCTCTCTCGTCGTATAGTTCGTGCCTTCCTCCACTTCCTAAATTCTGTTGAACCGGGTCCCGGGGTTGATGCTGAGGGGATTCAGGTTGCTAGAGAGTGTTTGACAGAGGCTTTCAAACTTAATTCTTCTTCTGTGGATGGGGATGATGGGACATCTGAATCTTTGATTGACATATTCAAGTCTCTTGAAGCTAACAAGCAAAATGAAACTAGAAAGTCGGATGTTGATACTCAATGGAATTGTGCGAATGCTTCCAGTTCATTCTCTGGTGAGAATCCTGCTCGTGGGATGAATCATTCTGAGGCGTCAAAATCTACGGTTGAAGATTCAACACAGGAACCTTGTACTTTTGCATCTAAAGATGAACTGTGCGGACAATTCTTTGCTGCTTTGGAGAAAAATCACTATTTCAGGAGAAATACTGATGGGAGTGATGACATAGTGCAACTGGAGAAAGCATGTTCTTTTTTTGATGAAGGTTGTAAGGAGATGGTAAGATCTGGTTGTCAGCAGTTCTGTTTGATGAGTTTGGCCGAATCACTAAAAACATTAGGTAACAAGGCAATGCAGTCTAAGAAATACAATGATGCAATTGAGTTGTATAATTGTGCTGTTGCACTCAATGAAAAGAATGCTGTTTACTTCTGCAACAGGGCAGCTGCTTACACTCAGATTAACAAATATTCGGAAGCAATTCAAGATTGTCTTAGATCTATCAAGATTGATCCAAACTACAGCAAGGCATACAGTCGTCTGGGTTTGGTTTATTATGCTCAAGGAAATTACAGAGATGCTATTGATAAAGGGTTTAGAAAAGCGTTGCAGTTGGATCCAAATAATGGCTCTGTCAAAGAAAATATCCGGGTGGCTGAGCAGAAATTGTTCGAAGAGCAAAACCGTGCACATCACAACCAGAATCCAACAAGATCATCGCAAGAAGTTCCAAACCAATCAGGAAGCACACCCCTGCCACCCACATTTTCTTCTGTGCCATTTAACCCCAGCCAAATGGCAAACATGCTCAGGCATATGACCTCAAACGCTACAAATTCACAACAGAGGCCACCGACTGAGGAATGGGAACAAGAAACTACTAGTGAAATTAGATTTGGGGCAGATATTTTAAACATGGAGCAAATTCCGGAGAATCTAACAGGGGCCGTTCAATCTATGATGGAAATTTTATCTAGGACCGTAACCCCGGGGCAACCACCTGAGGATCAAACCAATCCAAGAACAGGACCAAACTAA 1284 0.4213 MAHNHNSTDSPLSRRIVRAFLHFLNSVEPGPGVDAEGIQVARECLTEAFKLNSSSVDGDDGTSESLIDIFKSLEANKQNETRKSDVDTQWNCANASSSFSGENPARGMNHSEASKSTVEDSTQEPCTFASKDELCGQFFAALEKNHYFRRNTDGSDDIVQLEKACSFFDEGCKEMVRSGCQQFCLMSLAESLKTLGNKAMQSKKYNDAIELYNCAVALNEKNAVYFCNRAAAYTQINKYSEAIQDCLRSIKIDPNYSKAYSRLGLVYYAQGNYRDAIDKGFRKALQLDPNNGSVKENIRVAEQKLFEEQNRAHHNQNPTRSSQEVPNQSGSTPLPPTFSSVPFNPSQMANMLRHMTSNATNSQQRPPTEEWEQETTSEIRFGADILNMEQIPENLTGAVQSMMEILSRTVTPGQPPEDQTNPRTGPN 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12581g00006 427 ProSiteProfiles TPR repeat profile. 189 222 IPR019734 GO:0005515
Vium12581g00006 427 ProSiteProfiles TPR repeat profile. 223 256 IPR019734 GO:0005515
Vium12581g00006 427 ProSiteProfiles TPR repeat profile. 257 291 IPR019734 GO:0005515
Vium12581g00006 427 SUPERFAMILY TPR-like 188 302 IPR011990 GO:0005515
Vium12581g00006 427 PANTHER LD24721P 3 408 IPR047150 -
Vium12581g00006 427 Pfam TPR repeat 232 271 - -
Vium12581g00006 427 FunFam Small glutamine-rich tetratricopeptide repeat-containing protein alpha 2 76 - -
Vium12581g00006 427 MobiDBLite consensus disorder prediction 408 427 - -
Vium12581g00006 427 MobiDBLite consensus disorder prediction 96 121 - -
Vium12581g00006 427 FunFam Tetratricopeptide repeat (TPR)-like superfamily protein 185 332 - -
Vium12581g00006 427 MobiDBLite consensus disorder prediction 315 345 - -
Vium12581g00006 427 Gene3D Tetratricopeptide repeat domain 186 339 IPR011990 GO:0005515
Vium12581g00006 427 MobiDBLite consensus disorder prediction 309 345 - -
Vium12581g00006 427 Gene3D Immunoglobulin FC, subunit C 1 76 - -
Vium12581g00006 427 SMART tpr_5 257 291 IPR019734 GO:0005515
Vium12581g00006 427 SMART tpr_5 189 222 IPR019734 GO:0005515
Vium12581g00006 427 SMART tpr_5 223 256 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12581g00006 Vium-Chr12581 25504 34483 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12581g00006 187 316 U-box Gene Family AT3G07370 26.119 3.07e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12581g00006 K16365 - gmx:100799770 593.578