Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12581g00005 ATGGCTCACAATCACAACTCCACCGATTCTCCTCTCTCTCGTCGTATAGTTCGTGCCTTCCTCCACTTCCTAAATTCTGTTGAACCGGGTCCCGGGGTTGATGCTGAGGGGATTCAGGTTGCTAGAGAGTGTTTGACAGAGGCTTTCAAACTTAATTCTTCTTCTGTGGATGGGGATGATGGGACATCTGAATCTTTGATTGACATATTCAAGTCTCTTGAAGCTAACAAGCAAAATGAAACTAGAAAGTCGGATGTTGATACTCAATGGAATTGTGCGAATGCTTCCAGTTCATTCTCTGGTGAGAATCCTGCTCGTGGGATGAATCATTCTGAGGCGTCAAAATCTACGGTTGAAGATTCAACACAGGAACCTTGTACTTTTGCATCTAAAGATGAACTGTGCGGACAATTCTTTGCTGCTTTGGAGAAAAATCACTATTTCAGGAGAAATACTGATGGGAGTGATGACATAGTGCAACTGGAGAAAGCATGTTCTTTTTTTGATGAAGGTTGTAAGATGGTAAGATCTGGTTGTCAGCAGTTCTGTTTGATGAGTTTGGCCGAATCACTAAAAACATTAGGTAACAAGGCAATGCAGTCTAAGAAATACAATGATGCAATTGAGTTGTATAATTGTGCTGTTGCACTCAATGAAAAGAATGCTGTTTACTTCTGCAACAGGGCAGCTGCTTACACTCAGATTAACAAATATTCGGAAGCAATTCAAGATTGTCTTAGATCTATCAAGATTGATCCAAACTACAGCAAGGCATACAGTCGTCTGGGTTTGGTTTATTATGCTCAAGGAAATTACAGAGATGCTATTGATAAAGGGTTTAGAAAAGCGTTGCAGTTGGATCCAAATAATGGCTCTGTCAAAGAAAATATCCGGGTGGCTGAGCAGAAATTGTTCGAAGAGCAAAACCGTGCACATCACAACCAGAATCCAACAAGATCATCGCAAGAAGTTCCAAACCAATCAGGAAGCACACCCCTGCCACCCACATTTTCTTCTGTGCCATTTAACCCCAGCCAAATGGCAAACATGCTCAGGCATATGACCTCAAACGCTACAAATTCACAACAGAGGCCACCGACTGAGGAATGGGAACAAGAAACTACTAGTGAAATTAGATTTGGGGCAGATATTTTAAACATGGAGCAAATTCCGGAGAATCTAACAGGGGCCGTTCAATCTATGATGGAAATTTTATCTAGGACCGTAACCCCGGGGCAACCACCTGAGGATCAAACCAATCCAAGAACAGGACCAAACTAA 1281 0.4208 MAHNHNSTDSPLSRRIVRAFLHFLNSVEPGPGVDAEGIQVARECLTEAFKLNSSSVDGDDGTSESLIDIFKSLEANKQNETRKSDVDTQWNCANASSSFSGENPARGMNHSEASKSTVEDSTQEPCTFASKDELCGQFFAALEKNHYFRRNTDGSDDIVQLEKACSFFDEGCKMVRSGCQQFCLMSLAESLKTLGNKAMQSKKYNDAIELYNCAVALNEKNAVYFCNRAAAYTQINKYSEAIQDCLRSIKIDPNYSKAYSRLGLVYYAQGNYRDAIDKGFRKALQLDPNNGSVKENIRVAEQKLFEEQNRAHHNQNPTRSSQEVPNQSGSTPLPPTFSSVPFNPSQMANMLRHMTSNATNSQQRPPTEEWEQETTSEIRFGADILNMEQIPENLTGAVQSMMEILSRTVTPGQPPEDQTNPRTGPN 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12581g00005 426 MobiDBLite consensus disorder prediction 407 426 - -
Vium12581g00005 426 PANTHER LD24721P 3 407 IPR047150 -
Vium12581g00005 426 MobiDBLite consensus disorder prediction 314 344 - -
Vium12581g00005 426 ProSiteProfiles TPR repeat profile. 222 255 IPR019734 GO:0005515
Vium12581g00005 426 MobiDBLite consensus disorder prediction 308 344 - -
Vium12581g00005 426 FunFam Small glutamine-rich tetratricopeptide repeat-containing protein alpha 2 76 - -
Vium12581g00005 426 MobiDBLite consensus disorder prediction 96 121 - -
Vium12581g00005 426 Gene3D Immunoglobulin FC, subunit C 1 76 - -
Vium12581g00005 426 SUPERFAMILY TPR-like 187 301 IPR011990 GO:0005515
Vium12581g00005 426 FunFam Tetratricopeptide repeat (TPR)-like superfamily protein 184 331 - -
Vium12581g00005 426 Pfam TPR repeat 231 270 - -
Vium12581g00005 426 ProSiteProfiles TPR repeat profile. 188 221 IPR019734 GO:0005515
Vium12581g00005 426 Gene3D Tetratricopeptide repeat domain 185 338 IPR011990 GO:0005515
Vium12581g00005 426 ProSiteProfiles TPR repeat profile. 256 290 IPR019734 GO:0005515
Vium12581g00005 426 SMART tpr_5 256 290 IPR019734 GO:0005515
Vium12581g00005 426 SMART tpr_5 188 221 IPR019734 GO:0005515
Vium12581g00005 426 SMART tpr_5 222 255 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12581g00005 Vium-Chr12581 25504 34484 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12581g00005 186 315 U-box Gene Family AT3G07370 26.119 3.17e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12581g00005 K16365 - gmx:100799770 587.8