Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12581g00004 ATGGCTCACAATCACAACTCCACCGATTCTCCTCTCTCTCGTCGTATAGTTCGTGCCTTCCTCCACTTCCTAAATTCTGTTGAACCGGGTCCCGGGGTTGATGCTGAGGGGATTCAGGTTGCTAGAGAGTGTTTGACAGAGGCTTTCAAACTTAATTCTTCTTCTGTGGATGGGGATGATGGGACATCTGAATCTTTGATTGACATATTCAAGTCTCTTGAAGCTAACAAGCAAAATGAAACTAGAAAGTCGGATGTTGATACTCAATGGAATTGTGCGAATGCTTCCAGTTCATTCTCTGCATCTAAAGATGAACTGTGCGGACAATTCTTTGCTGCTTTGGAGAAAAATCACTATTTCAGGAGAAATACTGATGGGAGTGATGACATAGTGCAACTGGAGAAAGCATGTTCTTTTTTTGATGAAGGTTGTAAGGAGATGGTAAGATCTGGTTGTCAGCAGTTCTGTTTGATGAGTTTGGCCGAATCACTAAAAACATTAGGTAACAAGGCAATGCAGTCTAAGAAATACAATGATGCAATTGAGTTGTATAATTGTGCTGTTGCACTCAATGAAAAGAATGCTGTTTACTTCTGCAACAGGGCAGCTGCTTACACTCAGATTAACAAATATTCGGAAGCAATTCAAGATTGTCTTAGATCTATCAAGATTGATCCAAACTACAGCAAGGCATACAGTCGTCTGGGTTTGGTTTATTATGCTCAAGGAAATTACAGAGATGCTATTGATAAAGGGTTTAGAAAAGCGTTGCAGTTGGATCCAAATAATGGCTCTGTCAAAGAAAATATCCGGGTGGCTGAGCAGAAATTGTTCGAAGAGCAAAACCGTGCACATCACAACCAGAATCCAACAAGATCATCGCAAGAAGTTCCAAACCAATCAGGAAGCACACCCCTGCCACCCACATTTTCTTCTGTGCCATTTAACCCCAGCCAAATGGCAAACATGCTCAGGCATATGACCTCAAACGCTACAAATTCACAACAGAGGCCACCGACTGAGGAATGGGAACAAGAAACTACTAGTGAAATTAGATTTGGGGCAGATATTTTAAACATGGAGCAAATTCCGGAGAATCTAACAGGGGCCGTTCAATCTATGATGGAAATTTTATCTAGGACCGTAACCCCGGGGCAACCACCTGAGGATCAAACCAATCCAAGAACAGGACCAAACTAA 1200 0.42 MAHNHNSTDSPLSRRIVRAFLHFLNSVEPGPGVDAEGIQVARECLTEAFKLNSSSVDGDDGTSESLIDIFKSLEANKQNETRKSDVDTQWNCANASSSFSASKDELCGQFFAALEKNHYFRRNTDGSDDIVQLEKACSFFDEGCKEMVRSGCQQFCLMSLAESLKTLGNKAMQSKKYNDAIELYNCAVALNEKNAVYFCNRAAAYTQINKYSEAIQDCLRSIKIDPNYSKAYSRLGLVYYAQGNYRDAIDKGFRKALQLDPNNGSVKENIRVAEQKLFEEQNRAHHNQNPTRSSQEVPNQSGSTPLPPTFSSVPFNPSQMANMLRHMTSNATNSQQRPPTEEWEQETTSEIRFGADILNMEQIPENLTGAVQSMMEILSRTVTPGQPPEDQTNPRTGPN 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12581g00004 399 Gene3D Tetratricopeptide repeat domain 158 311 IPR011990 GO:0005515
Vium12581g00004 399 SUPERFAMILY TPR-like 160 274 IPR011990 GO:0005515
Vium12581g00004 399 ProSiteProfiles TPR repeat profile. 195 228 IPR019734 GO:0005515
Vium12581g00004 399 MobiDBLite consensus disorder prediction 380 399 - -
Vium12581g00004 399 MobiDBLite consensus disorder prediction 281 317 - -
Vium12581g00004 399 MobiDBLite consensus disorder prediction 287 317 - -
Vium12581g00004 399 PANTHER LD24721P 2 380 IPR047150 -
Vium12581g00004 399 FunFam Tetratricopeptide repeat (TPR)-like superfamily protein 157 304 - -
Vium12581g00004 399 FunFam Small glutamine-rich tetratricopeptide repeat-containing protein alpha 2 76 - -
Vium12581g00004 399 ProSiteProfiles TPR repeat profile. 161 194 IPR019734 GO:0005515
Vium12581g00004 399 SMART tpr_5 195 228 IPR019734 GO:0005515
Vium12581g00004 399 SMART tpr_5 229 263 IPR019734 GO:0005515
Vium12581g00004 399 SMART tpr_5 161 194 IPR019734 GO:0005515
Vium12581g00004 399 Pfam TPR repeat 204 243 - -
Vium12581g00004 399 ProSiteProfiles TPR repeat profile. 229 263 IPR019734 GO:0005515
Vium12581g00004 399 Gene3D Immunoglobulin FC, subunit C 1 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12581g00004 Vium-Chr12581 25504 34484 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12581g00004 159 288 U-box Gene Family AT3G07370 26.119 2.48e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12581g00004 K16365 - gmx:100799770 531.946