Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12577g00010 ATGGAGGCTAGATTTGGTGCGGAGGCTTATCATTTTTTTGGCGTGGGGGCTTCGTCGGATTTGAGGGGTATGGGGAAGAGGTCGTCGGAGTGGGATTTGAATGATTGGAGATGGGATGGCGATCTGTTCATAGCAAGCCGGTTGAATCCAGTGCCAGCGGATGGTGTGGGAGTGGGACAGCAATTTTTCCCTCTAGGGTCTGGGATCCCGGTGGTTGGAGGTCCCTCCAACAGTTCTTCCTGCTCTGAGGAAGTAGATCCTAGGGATCCCAAGGGGAACAAGGAAGGGGACAAGAAAAGGAGAGTTATTGTACTGGAGGATGATGGTTTGAATGAGGAAGCGGGTACTCTTAGTTTAAAGCTTGGTGGGCATGCTTCTGCAGTGGTGGATAGGGAAGTTGCGAGCTGGGATGGTATGAATGGGAAGAAGAGTAGAGTATCTGGAAGTACTTCAAATCGAGCTGTTTGTCAGGTGGAGGACTGCAGTGCTGATCTGAGCAAAGCTAAGGATTATCACAGACGACATAAAGTTTGCGAGATGCATTCCAAGGCCAGTCGGGCACTTGTCGGAAATGCAATGCAAAGATTCTGTCAACAATGTAGTAGGTTTCACATGCTTCAAGAGTTTGATGAGGGAAAGAGAAGCTGCAGAAGACGCTTGGCAGGACATAATAAACGAAGAAGGAAAACGAATCATGAACCTGTTCCTAGTGGAAGTTCATTAAATGATGATCAGACTAGTAGCTATCTGTTGATAAGTTTATTGAAGATACTTTCAAATATGCATTCTGACAGGTCAAATCAGACTACAGATCAGGATCTACTAACTCATATTCTGAGGAGTCTTGCTAGTCAGAATGGCGAGCAAGGGGCCAAGAACATTTCTAACCTTTTGCAAGAACCAGAGAATTTGTTGAGAGAAGGTGGTTCATCAAGGAAGTCAGAGATGGTGTCAACTTTATTCTCCAATGGTTCTCAAGGCTCCCCAACTGTTACAAGACAGCATGAAGCTGTGTCCATGGCTAAACTGCAGCAACAAGTAACGCATGCACATGATGCTAGGGCCTCTGATCAGCAAATTACTTCTTCTATAAAGCCCAGCATGTCAAACAGTCCACCGGCCTACTCTGAAGCTAGAGACAGCACTGCTGGACAGATCAAGATGAATAATTTTGATTTGAATGACATATATATTGACTCAGATGATGGTATGGAAGATCTGGAAAGATTGCCTGTCTCAGCAAACCTTGTAACTAGCTCTCTTGATTACCCATGGGCACAACAAGATTCTCATCAGTCAAGTCCACCTCAAACAAGTGGAAATTCTGATTCTGCTTCTGCCCAGTCTCCTTCTAGTTCCAGTGGAGAAGCTCAGAGTCGCACAGATCGAATTGTTTTTAAGCTCTTTGGTAAAGAGCCAAATGATTTTCCTCTTGTACTTAGAGCACAGATTCTTGACTGGTTATCTCACAGTCCTACTGATATGGAGAGCTACATAAGGCCTGGTTGTATTGTTTTGACCATTTATCTGCGTCAGGCTGAGGCTTTGTGGGAGGAACTTTGCTATGATCTGACTTCCAGTTTGAATAGGCTGTTGGATGTCTCTGATGACACTTTTTGGAGAAATGGATGGGTTCACATCAGGGTGCAGCATCAGATGGCCTTCATTTTTAATGGTCAAGTTGTCATCGATACTTCCTTACCCTTTAGAAGTAACAACTATAGCAAGATTTTGACTGTTAGTCCAATTGCTGTGCCAGCATCAGAGAGAGCTCAATTTTCTGTTAAGGGTGTCAACCTGATACGCCCTGCCACTAGGTTAATGTGTGCTTTAGAAGGGAAATATCTGGTCTGTGAAGATGCTCATATGTCAATGGATCAGTGCTCCAATGAGCCTGATGAACTTCAGTGCGTCCAGTTTTCATGTTCTGTCCCTGTGATGAATGGAAGAGGATTTATTGAGATTGAGGACCAGGGTTTGAGTAGCAGCTTTTTTCCTTTCATTGTTGTGGAGGAGGATGTTTGCTCAGAAATATGTACACTTGAGCCTCTTCTAGAAATAAGTGAAACTGACCCAGATATTGAAGGGACTGGAAAAGTTAAAGCCAAAAATCAAGCCATAGATTTTATTCATGAAATGGGTTGGCTTCTGCACAGAAGCCAGTTGAAATTAAGGATGGTGCACTTGAACTCTACCGTTGATCCCTTTCCATTGAAACGATTCAAGTGGCTTATTGAGTTTTCCATGGATCATGATTGGTGTGCAGCAGTGAAAAAACTTCTAAATCTACTGCTTGATGGAACTGTAAATGCTGGAGATCATCCTTCCCTGTATCTTGCACTTTCAGATATGGGACTCCTTCACAAAGCTGTACGAAGAAATAGCAAGCAGTTAGTCGAGTTGCTTTTGAGATATGTTCCTGAGAATATTTCAGATGAACTAGGACCTGAAGTCAAGGCTCTAGTTGATGGAGAGAACAAGACCTTCTTGTTTAGACCTGATGTTGTGGGTCCCGCTGGTTTGACACCCCTCCATATAGCAGCTGGGAAAGATGGTTCCGAGGATGTGCTCGATGCTTTAACTAATGATCCTTGCATGGTTGGAATTGAAGCATGGAAAAATGCTCGTGACAGCACAGGCTCTACACCCGAGGATTACGCACGTTTACGTGGTCACTATGCTTACATTCACTTGGTGCAGAAGAAAATTAACAAGAGACATGGAGCAGCTCATGTGGTTGTTGAAATTCCAAGTAACACGACAGAGAGCAATACAAACCAGAAGCAAAATGAGACATCGACTAGCTTTGAGATTGGAAAGCCTGCAGTTAGGCTTAGCCAAGGGCATTGTAAACTCTGTGACAGTAAAATTTCCTGCAGAACCGCAGTAGGTAGGTCTTTGGTGTACAGACCTGCAATGCTCTCAATGGTAGCCATAGCTGCAGTATGTGTCTGTGTGGCCCTTCTGTTTAAGAGCTCTCCCGAAGTAATATGTATGTTCCGACCCTTCAGATGGGAAACTTTGGACTTTGGAACAAGCTAA 3042 0.4408 MEARFGAEAYHFFGVGASSDLRGMGKRSSEWDLNDWRWDGDLFIASRLNPVPADGVGVGQQFFPLGSGIPVVGGPSNSSSCSEEVDPRDPKGNKEGDKKRRVIVLEDDGLNEEAGTLSLKLGGHASAVVDREVASWDGMNGKKSRVSGSTSNRAVCQVEDCSADLSKAKDYHRRHKVCEMHSKASRALVGNAMQRFCQQCSRFHMLQEFDEGKRSCRRRLAGHNKRRRKTNHEPVPSGSSLNDDQTSSYLLISLLKILSNMHSDRSNQTTDQDLLTHILRSLASQNGEQGAKNISNLLQEPENLLREGGSSRKSEMVSTLFSNGSQGSPTVTRQHEAVSMAKLQQQVTHAHDARASDQQITSSIKPSMSNSPPAYSEARDSTAGQIKMNNFDLNDIYIDSDDGMEDLERLPVSANLVTSSLDYPWAQQDSHQSSPPQTSGNSDSASAQSPSSSSGEAQSRTDRIVFKLFGKEPNDFPLVLRAQILDWLSHSPTDMESYIRPGCIVLTIYLRQAEALWEELCYDLTSSLNRLLDVSDDTFWRNGWVHIRVQHQMAFIFNGQVVIDTSLPFRSNNYSKILTVSPIAVPASERAQFSVKGVNLIRPATRLMCALEGKYLVCEDAHMSMDQCSNEPDELQCVQFSCSVPVMNGRGFIEIEDQGLSSSFFPFIVVEEDVCSEICTLEPLLEISETDPDIEGTGKVKAKNQAIDFIHEMGWLLHRSQLKLRMVHLNSTVDPFPLKRFKWLIEFSMDHDWCAAVKKLLNLLLDGTVNAGDHPSLYLALSDMGLLHKAVRRNSKQLVELLLRYVPENISDELGPEVKALVDGENKTFLFRPDVVGPAGLTPLHIAAGKDGSEDVLDALTNDPCMVGIEAWKNARDSTGSTPEDYARLRGHYAYIHLVQKKINKRHGAAHVVVEIPSNTTESNTNQKQNETSTSFEIGKPAVRLSQGHCKLCDSKISCRTAVGRSLVYRPAMLSMVAIAAVCVCVALLFKSSPEVICMFRPFRWETLDFGTS 1013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12577g00010 1013 SUPERFAMILY SBT domain 154 233 IPR036893 GO:0003677|GO:0005634
Vium12577g00010 1013 MobiDBLite consensus disorder prediction 84 102 - -
Vium12577g00010 1013 MobiDBLite consensus disorder prediction 312 383 - -
Vium12577g00010 1013 MobiDBLite consensus disorder prediction 306 383 - -
Vium12577g00010 1013 MobiDBLite consensus disorder prediction 426 459 - -
Vium12577g00010 1013 Pfam SBP domain 156 229 IPR004333 GO:0003677
Vium12577g00010 1013 Gene3D - 753 914 IPR036770 -
Vium12577g00010 1013 Gene3D - 146 217 IPR036893 GO:0003677|GO:0005634
Vium12577g00010 1013 MobiDBLite consensus disorder prediction 74 102 - -
Vium12577g00010 1013 ProSiteProfiles Zinc finger SBP-type profile. 153 230 IPR004333 GO:0003677
Vium12577g00010 1013 FunFam Squamosa promoter-binding-like protein 14 147 217 - -
Vium12577g00010 1013 MobiDBLite consensus disorder prediction 220 242 - -
Vium12577g00010 1013 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 93 900 IPR044817 GO:0003677
Vium12577g00010 1013 SUPERFAMILY Ankyrin repeat 781 899 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12577g00010 Vium-Chr12577 31247 38588 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12577g00010 1 1013 SBP-box Gene Family AT3G60030 53.794 0.0 961
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vium12577g00010 SBP 4e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12577g00010 - - gmx:100809806 1895.55