Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12577g00002 ATGGCTGCATTTGCACACCTCCATCTAATGCTCTCAACCTTCTTTCTAATTCTATCCATTTTGCCATCCACCTCCGCATCTTTGAAGGTTGATTTCTACAAAACCACGTGTCCTTCTGCGGAAGCAACAGTCAGAAGCGCTGTGGAGAAAGCCGTTTCTCTCAACCCAGGCATAGCTGCTGGTTTGATCAGAATGCATTTTCATGATTGTTTTGTGAGGGGCTGTGATGGTTCTGTGCTGTTGGAATCCACACCGGGGAACCCATCAGAGAGAGACCACCCTGCCAACAACCCAAGTCTACGAGGCTTCCATGTCATCGACGAAGCCAAGGCCCAAATAGAGGCAGAGTGTCCACACATCGTGTCCTGTGCAGACATTCTCGCTTTTGCTGCTCGAGACAGCGCCAACAAAGTTGGAGGCATAAACTACGCAGTGCCGGCTGGACGCAGAGATGGTCGTGTCTCCATCAGAGACGAAGCGTCACAACTGCCCCTTCCAACCCTCAACGCAGACCAACTCATCGATAACTTCCGACAAAAAGGGTTGTCTGCAGATGAAATGGTGACACTTTCTGGAGCCCATTCTATTGGTGTGTCACACTGTTCCTCCTTCTCCGACCGCTTGCACTCTTTCAATGCCACCTTTCCTCAAGATCCTTCCATGGATTCCAAATACGCTACGTCGTTGAAACCCATGTGTCCACCGGGGAGCGATAACACGGTGCCTCTGGATGCCTCCACTCCTAACCGTTTGGACAACAAATACTACACAGAGCTGAAGAACCACCGTGGTTTGCTTACCTCGGATCAGACCTTGCTCGTCAGCCCCTCAACCAGGCCAATGGTACTCACCAATGCTAAATATTCCTCAGTCTGGGCTCGCAAGTTTGCTAAGGCAATGGTCCATATGGGTTCCATTGACGTCCTCACCGGTTCACAGGGCGAGATCAGGACCCGTTGTTCCCTCGTTAATTGA 975 0.5087 MAAFAHLHLMLSTFFLILSILPSTSASLKVDFYKTTCPSAEATVRSAVEKAVSLNPGIAAGLIRMHFHDCFVRGCDGSVLLESTPGNPSERDHPANNPSLRGFHVIDEAKAQIEAECPHIVSCADILAFAARDSANKVGGINYAVPAGRRDGRVSIRDEASQLPLPTLNADQLIDNFRQKGLSADEMVTLSGAHSIGVSHCSSFSDRLHSFNATFPQDPSMDSKYATSLKPMCPPGSDNTVPLDASTPNRLDNKYYTELKNHRGLLTSDQTLLVSPSTRPMVLTNAKYSSVWARKFAKAMVHMGSIDVLTGSQGEIRTRCSLVN 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12577g00002 324 SUPERFAMILY Heme-dependent peroxidases 28 324 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vium12577g00002 324 FunFam Peroxidase 31 172 - -
Vium12577g00002 324 PRINTS Haem peroxidase superfamily signature 121 138 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium12577g00002 324 PRINTS Haem peroxidase superfamily signature 244 259 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium12577g00002 324 PRINTS Haem peroxidase superfamily signature 186 201 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium12577g00002 324 PRINTS Haem peroxidase superfamily signature 59 73 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium12577g00002 324 PRINTS Haem peroxidase superfamily signature 139 151 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium12577g00002 324 ProSitePatterns Peroxidases proximal heme-ligand signature. 186 196 IPR019793 -
Vium12577g00002 324 Gene3D Peroxidase, domain 2 164 303 - -
Vium12577g00002 324 ProSiteProfiles Plant heme peroxidase family profile. 27 324 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium12577g00002 324 Gene3D - 31 324 - -
Vium12577g00002 324 PRINTS Plant peroxidase signature 101 114 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium12577g00002 324 PRINTS Plant peroxidase signature 258 275 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium12577g00002 324 PRINTS Plant peroxidase signature 120 130 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium12577g00002 324 PRINTS Plant peroxidase signature 139 154 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium12577g00002 324 PRINTS Plant peroxidase signature 242 257 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium12577g00002 324 PRINTS Plant peroxidase signature 298 311 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium12577g00002 324 PRINTS Plant peroxidase signature 61 81 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium12577g00002 324 PRINTS Plant peroxidase signature 185 197 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium12577g00002 324 PRINTS Plant peroxidase signature 37 56 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium12577g00002 324 CDD secretory_peroxidase 28 323 IPR033905 GO:0004601|GO:0042744
Vium12577g00002 324 FunFam Peroxidase 164 303 - -
Vium12577g00002 324 ProSitePatterns Peroxidases active site signature. 59 70 IPR019794 GO:0004601
Vium12577g00002 324 PANTHER PEROXIDASE 25-RELATED 16 317 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium12577g00002 324 Pfam Peroxidase 44 284 IPR002016 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12577g00002 Vium-Chr12577 4954 6563 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12577g00002 7 324 Peroxidase AT1G05260 46.769 7.10e-92 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12577g00002 K00430 - gmx:100815158 559.681