Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12574g00001 ATGTCGAGTTTCCAAGTCGGCGGCAAGGTTGTGGACCGCGTCGATTTGCTCAGGAAGAAGCAATTGACGTGGCGCCTTGACGTTTGGCCTTTCGCCATGCTTTACTGTGCGTGGCTTTCGGTTATTCTTCCCAGCCTCGACTTTGTGGATGCAGCGATCGTTTTAGGCGCGCTCCTTGCGCTTCACATCCTCGTTTGGCTCTTCACTGGTTGGTCTGTTGATTTCAAATGTTTCGCTCACTATAGCAAGGCTAAAAATATTGACCAGGCTGATTCCTGCAAGATTACCCCGGCTAAGTTCTCGGGTTCTAAAGAAGTTGTGCCGCTTCATTCTCGGAAAAGTTCTGCAGGTTCTTCATCAGCTGTGGATTTGGAAGAGAACTACTTTGATTTTAGAAAACAATGTTTTGTGTATTCAAAGGAGAAGGGAACATTTTGCAAGCTTTCCTACCCTACCAAAGAAACATTTGGATGTTACATCAAATGCAGTGGCCATGGCTCTGAAGCTAAAGTTCTTGCAGCTACTGAGAAATGGGGACGGAATGTATTTGATTATCCTCAACCAACATTTCAGAAATTAATGAAAGAGCATTGCATGGAGCCTTTTTTCGTATTTCAGGTTTTTTGTGTGGGGCTCTGGTGTTTGGATGAATATTGGTATTACAGTTTGTTCACTCTATTTATGCTCTTTATGTTTGAGTCAACCATGGCGAAAAGTAGATTGAAAACTCTAACTGAGTTGAGACGTGTTAGAGTGGACAGTCAGATCCTAATGGTACATCGCTGTGGCAAGTGGGTTAAACTCTCTGGTACAGACCTTTTGCCAGGGGATGTTGTCTCCATAGGCCGCTCTTCTAGTCAGAATGGGGAGGAGAAGTCTGTACCAGCAGACATGCTTATATTGGCTGGAAGTGTGATTGTGAATGAAGCTATTCTCACAGGCGAGTCTACTCCTCAATGGAAGATTTCAATTGCGGGTAGGGGTATGGAGGAGAAATTGTCAGCAAAGCGAGATAAAAGCCACGTTTTGTTTGGTGGGACAAAAATATTGCAGCATACCCCAGATAAGAGTTTTCCTCTTAAAACTCCTGATGGTGGCTGCTTGGCTGTTGTCCTGAGAACGGGTTTTGAAACAAGTCAAGGAAAGTTGATGCGAACAATCTTATTCTCTACAGAAAGGGTGACTGCCAATAGCTGGGAAAGTGGATTATTCATTTTATTCTTGGTTGTGTTTGCTCTTATTGCTGCTGGTTATGTGCTTGTTAAGGGGCTGGAAGATCCCACAAGGAGCAAGTATAAACTAATACTAAGTTGTTCACTTATTGTTACTTCTGTGATACCTCCTGAGTTACCAATGGAATTATCGATAGCTGTTAATACTTCTCTTATTGCCCTGGCACGACGTGGGATTTTTTGCACAGAGCCTTTTAGGATACCATTTGCTGGAAAGGTTGATATATGTTGTTTTGACAAGACAGGGACACTTACATCTGATGATATGGAATTTTCTGGAGTTGTTGGGTTGAATGGAACTACAGATTTGGAGTCTGATACAAGTAGAGTGCCTGTACGAACAGTTGAAATCCTGGCTTCTTGCCATGCATTGGTGTTTGTTGAGAATAAGCTGGTATGCCTCTCTGCCTGGTGTGATTAA 1653 0.4319 MSSFQVGGKVVDRVDLLRKKQLTWRLDVWPFAMLYCAWLSVILPSLDFVDAAIVLGALLALHILVWLFTGWSVDFKCFAHYSKAKNIDQADSCKITPAKFSGSKEVVPLHSRKSSAGSSSAVDLEENYFDFRKQCFVYSKEKGTFCKLSYPTKETFGCYIKCSGHGSEAKVLAATEKWGRNVFDYPQPTFQKLMKEHCMEPFFVFQVFCVGLWCLDEYWYYSLFTLFMLFMFESTMAKSRLKTLTELRRVRVDSQILMVHRCGKWVKLSGTDLLPGDVVSIGRSSSQNGEEKSVPADMLILAGSVIVNEAILTGESTPQWKISIAGRGMEEKLSAKRDKSHVLFGGTKILQHTPDKSFPLKTPDGGCLAVVLRTGFETSQGKLMRTILFSTERVTANSWESGLFILFLVVFALIAAGYVLVKGLEDPTRSKYKLILSCSLIVTSVIPPELPMELSIAVNTSLIALARRGIFCTEPFRIPFAGKVDICCFDKTGTLTSDDMEFSGVVGLNGTTDLESDTSRVPVRTVEILASCHALVFVENKLVCLSAWCD 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12574g00001 550 FunFam Cation-transporting ATPase 226 388 - -
Vium12574g00001 550 Gene3D - 226 388 - -
Vium12574g00001 550 SUPERFAMILY Calcium ATPase, transduction domain A 255 387 IPR008250 -
Vium12574g00001 550 ProSitePatterns E1-E2 ATPases phosphorylation site. 490 496 IPR018303 -
Vium12574g00001 550 NCBIfam HAD-IC family P-type ATPase 403 510 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium12574g00001 550 PANTHER CATION-TRANSPORTING ATPASE-RELATED 12 543 IPR006544 GO:0006812|GO:0016020|GO:0019829|GO:0140358
Vium12574g00001 550 Pfam E1-E2 ATPase 258 468 - -
Vium12574g00001 550 SUPERFAMILY Calcium ATPase, transmembrane domain M 167 482 IPR023298 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12574g00001 1 543 Primary Pumps ATPases AT5G23630 81.066 0.0 926
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12574g00001 K14950 - vum:124821481 1097.03