Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12558g00001 ATGGAAATCTTCACCCGTCGCGGCTTCACCCTCTACGGCTTCTCCGTGGAGGACGACACCTGCGGGTTCAACTCATCCTCCCAGAACAAACCATTCCTCTGCTTCCGCTACCGCTCCCAATCCACACTCACCCCACCATGGATTCGCAAATACAAACCGAGCAAAATGGCTTTTTTCGCTGCCGCTACCCACAACTTCGACCCCAAGCGGAAAATCAGGGACGACGGGTTTGGGTCCGTCTACCTTGCACAGCTCCGTGACAATCGCCTTGCGGTGGTGAAGTACCTCCACCGCAACCACTCCTCCGTCGTGTTCTCTACCAAGTCCTTCTGTAACGAGATCCTCATCCTCTCCTCGATCCACCACGCGAACCTGGTGAAGCTCCACGGTTACTGCAGTGACTTGAGGGGAAGGAGAGGAAGAAGACCCACCGCTGAGAAGAAGACAAATTTAAAGAAGACACTATCTAGGCCATAA 477 0.5409 MEIFTRRGFTLYGFSVEDDTCGFNSSSQNKPFLCFRYRSQSTLTPPWIRKYKPSKMAFFAAATHNFDPKRKIRDDGFGSVYLAQLRDNRLAVVKYLHRNHSSVVFSTKSFCNEILILSSIHHANLVKLHGYCSDLRGRRGRRPTAEKKTNLKKTLSRP 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12558g00001 158 ProSiteProfiles Protein kinase domain profile. 66 158 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium12558g00001 158 MobiDBLite consensus disorder prediction 139 158 - -
Vium12558g00001 158 Gene3D Phosphorylase Kinase; domain 1 35 138 - -
Vium12558g00001 158 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 45 136 - -
Vium12558g00001 158 Pfam Protein tyrosine and serine/threonine kinase 70 133 IPR001245 GO:0004672|GO:0006468
Vium12558g00001 158 SUPERFAMILY Protein kinase-like (PK-like) 43 134 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12558g00001 Vium-Chr12558 74230 74879 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12558g00001 26 137 Receptor kinase-like Gene Family AT1G69910 50.000 2.46e-26 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Vium12558g00001 PK_Tyr_Ser-Thr 1.1e-05 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12558g00001 - - vum:124821476 328.176