Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12553g00001 ATGGTGGATGCCATGAAGAAGGTGGCGAAGCTGGACATTGAGCTGAGTGTGGAAGAGAGGAACTTGTTCTCTGTTGGATACAAAAATGTGGTGAGGTCACAGAGAGATTCATGGATGATCTTGTCATCGATAGAGCAGAAAGAGGAGTCAAAAGGGAATGAGTTGAATGTTAAGTGCATAAGGGATTATAGGCACAAGGTCGTGTTGGAGCTGTCTAATATTTATAGTGACATTATGATAATGTTAGATGAGCATCTTATTCCATCCACTAATATTGCGGAGTCCATGGTGTTTTATTATAGGATGAAAGGAGACTATTACTGGTATTTGGCAGAATTCAAAGCTGGTAATGAAAAGAATGAGGTAGCAGAGCAGTCACTTAAAGCATATCAGACAACTGCTACCACTGTTGAGAGTGAATTACAACCTACACATCCTATTCGTTTGGGTCTGCCTCTAAATTTCTCTATGTTTTATTATGAGATAATGAATTCACCTGAAAGGGCCTGCCATCTTGCTAAGCAAGCGTTTGGTGTTGTTGCCCTTGTTATTGTTCTACTTGGCTGTTTGAAGGTTGAAACTGTACAGTTCTCCCAACCTTTGCCATAG 609 0.4056 MVDAMKKVAKLDIELSVEERNLFSVGYKNVVRSQRDSWMILSSIEQKEESKGNELNVKCIRDYRHKVVLELSNIYSDIMIMLDEHLIPSTNIAESMVFYYRMKGDYYWYLAEFKAGNEKNEVAEQSLKAYQTTATTVESELQPTHPIRLGLPLNFSMFYYEIMNSPERACHLAKQAFGVVALVIVLLGCLKVETVQFSQPLP 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12553g00001 202 PIRSF 14-3-3 1 181 IPR000308 -
Vium12553g00001 202 Gene3D - 1 182 IPR036815 -
Vium12553g00001 202 SUPERFAMILY 14-3-3 protein 1 178 IPR036815 -
Vium12553g00001 202 PANTHER 14-3-3 PROTEIN 1 178 IPR000308 -
Vium12553g00001 202 Pfam 14-3-3 protein 1 177 IPR023410 -
Vium12553g00001 202 SMART 1433_4 1 200 IPR023410 -
Vium12553g00001 202 PRINTS 14-3-3 protein zeta signature 94 116 IPR000308 -
Vium12553g00001 202 PRINTS 14-3-3 protein zeta signature 63 87 IPR000308 -
Vium12553g00001 202 PRINTS 14-3-3 protein zeta signature 129 155 IPR000308 -
Vium12553g00001 202 PRINTS 14-3-3 protein zeta signature 14 43 IPR000308 -
Vium12553g00001 202 PRINTS 14-3-3 protein zeta signature 156 182 IPR000308 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12553g00001 Vium-Chr12553 6792 7978 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12553g00001 1 177 14-3-3 family AT2G42590 69.492 1.17e-88 260
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12553g00001 K06630 - gmx:547574 306.605