Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1254g00001 ATGGCTGCCGCCAGCGATGTTTTCAGGCCGGAAGTGGGTTCCGGGAAGCTCCACGTCCTTGCCGTTGATGACAGCCACGTCGACCGCAAGGTTATTGAGAGGTTGCTCAAAATCTCTTCTTGCAAAGTGACGGTGGTGGAAAGTGGAAGCAGGGCTCTGCAGTATCTGGGGTTGGATGGAGAGAAGAGCTCCATTGGTTTTGATAGTGTCAAGGTTAATTTGATAATGACAGACTACTCCATGCCGGGTATGACAGGATATGAACTGCTCAAGAAGATAAAGGAATCATCTGTGTTTAGAGAGGTTCCAGTGGTGGTTATGTCGTCTGAGAATATCTTGACTCGAATTGATAGTTGCCTGGAGGAAGGAGCAGAAGAGTTTCTGTTGAAACCTGTGAAGTTGTCAGATGTAAAACGCGTGACAGATTTTATCATGAAAGGTGAAGGGAAGAAAGGTCATAAAAGAAGTAGATCAGATGATTACAGCCCTCCATCATCATCATCATCATCTATTTCAACTGCGTTCTCATCAGTTTCTCATTCCTGTGATCTATCTTTGCCTGCATCACCTTCTGCATTGCTCTCAAAGAAAACCAGATTGAGCATATAG 609 0.4499 MAAASDVFRPEVGSGKLHVLAVDDSHVDRKVIERLLKISSCKVTVVESGSRALQYLGLDGEKSSIGFDSVKVNLIMTDYSMPGMTGYELLKKIKESSVFREVPVVVMSSENILTRIDSCLEEGAEEFLLKPVKLSDVKRVTDFIMKGEGKKGHKRSRSDDYSPPSSSSSSISTAFSSVSHSCDLSLPASPSALLSKKTRLSI 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1254g00001 202 SUPERFAMILY CheY-like 16 145 IPR011006 -
Vium1254g00001 202 Gene3D - 16 177 - -
Vium1254g00001 202 MobiDBLite consensus disorder prediction 148 173 - -
Vium1254g00001 202 PANTHER TWO-COMPONENT RESPONSE REGULATOR 17 165 IPR045279 GO:0009736
Vium1254g00001 202 Pfam Response regulator receiver domain 19 138 IPR001789 GO:0000160
Vium1254g00001 202 ProSiteProfiles Response regulatory domain profile. 18 145 IPR001789 GO:0000160
Vium1254g00001 202 CDD REC_typeA_ARR 19 140 - -
Vium1254g00001 202 SMART REC_2 17 141 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1254g00001 Vium-Chr1254 3776 5795 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1254g00001 17 148 Response Regulator Gene Family AT5G62920 82.576 2.65e-76 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vium1254g00001 Response_reg 7.3e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1254g00001 K14492 - gmx:100306152 295.819