Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12545g00001 ATGATTCGGGAAACACTTTATGGAAAAAAGGTGCTCATTGTACTTGGTGATGTGCCTAACAATTATGAACTTTTAGCACTATGGACTTATAATCATTATTGGTTCAGTAAAGGAACTGTAATAATCATTACAACAAGCGATGAAGACCTACTGATGAACCAGCCGATAGATTCTATATTTCGGATAGAGCGAATGAACGCAGAGGAGTCCCTTGAGCTTTTTAGTTGGCACGCATTTAGAGAACCAAAACCAAAGGATGAATACGAAGACCTTGCAAGAAGAGTAGTTAGGTATTGTGGAGGTCTACCACTAGCTCTTGAAATCGTTGGAAAGATAATAAAAGTAAGCATCGAAGGTTCACTGAATGAAATGGAAAAAGATATATTCCTTGATGTATGTTGTTTCTTTGTTGGTAAGAGCAAAGCCTATGTTAGGAAGATCTTAAATGGCTGTGGAGTAGACGCTGATATTGGAATAAGAGTTCTCATGGAGCGTAACCTCATCAAAATTAACAAGAACAACAAATTTGGAATCCATCCTTTGCTACAAGAAATCGGAGAACAAATTATTCGTGAAAAATCAGGAAACGATCTTGGAAAGAACAGGCGACTGTGGCTTGATAAGGATGCAAAATATGGGACAGAAGCCTTGCAGTGGTTCCCTGTGAAACTGCCTTTAGTTAACAATGGCTTCCAAGACGTACAACCGACT 711 0.3868 MIRETLYGKKVLIVLGDVPNNYELLALWTYNHYWFSKGTVIIITTSDEDLLMNQPIDSIFRIERMNAEESLELFSWHAFREPKPKDEYEDLARRVVRYCGGLPLALEIVGKIIKVSIEGSLNEMEKDIFLDVCCFFVGKSKAYVRKILNGCGVDADIGIRVLMERNLIKINKNNKFGIHPLLQEIGEQIIREKSGNDLGKNRRLWLDKDAKYGTEALQWFPVKLPLVNNGFQDVQPT 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12545g00001 237 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 1 209 IPR044974 GO:0006952
Vium12545g00001 237 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 131 IPR027417 -
Vium12545g00001 237 Gene3D - 64 128 IPR042197 -
Vium12545g00001 237 PRINTS Disease resistance protein signature 5 19 - -
Vium12545g00001 237 PRINTS Disease resistance protein signature 99 113 - -
Vium12545g00001 237 Pfam NB-ARC domain 1 115 IPR002182 GO:0043531
Vium12545g00001 237 SUPERFAMILY "Winged helix" DNA-binding domain 110 210 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12545g00001 Vium-Chr12545 154 1042 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12545g00001 1 212 WRKY Transcription Factor Family AT5G45050 30.417 8.20e-30 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12545g00001 - - vum:124821470 484.952