Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1252g00014 ATGGAAGCACCAGAGGAACTCTCTCTGGGGGGGTCCAAAGATCACGCCAACATTGTCAAGGGGAAAAGAACCAAAAGGGTCAGACCACAATCCCCTATCCCCTTCTCTGTCACCGCCAATTCCTCCACCGGAGAAGGAGAAAGAGAAGATTGCTGCAATGTTGATGACAACACCAACAACAAAAATTATGATATTAATAATAACAACATCATCGTCAACAACATCAACAACAACAACTCTCCCACCACTTCCTCTGCAGGATTACAAGACAGCACGGATGAAGAGGAGGACATGGCCAATTGCCTCATCCTTCTGGCACAAGGACAATCTCGGGAATCTCCAAAACATGTCGAGGAAGATGTGGGAATGAACTACGCCAAGTACAGCAGTAGGAAATTCTTGGAGGCGGCCACCTTGGGGTCTAGCAGGGCAGGGTACTATGTTTATGAATGCAAGACGTGTAACAGAACTTTCCCTTCTTTTCAAGCACTCGGAGGCCACAGGGCCAGTCACAAGAAGCTTAAGGCAGTCGTGCCCATTCCCCAAGAGAAGAAGCACCAACACCTTTTGTCATCGGATGAGGACGACTTTCAATTGAAGCCCAACAATAAATCACCGTTTTCCCTTCAACTCGGTACAAAGGCCAGTTTGTACAACAAATCCAAGGTGCACGAGTGCTCCATCTGTGGTGCTGAATTCACATCGGGGCAAGCACTGGGAGGCCACATGAGACGCCACCGCGCACCGGTTGGGATCCCCACCACACTCTCCTTCACCCCATTGACTCTGGAACCGGAAGAAGATCACCCCAGAAAGAAAAGGAATGTCTTGAACTTGGAATTGGATCTCAATCTTCCCGCCCCAGAAGATGATCAAAGAGAATCCAAGTTTTCCTTTGCATCCAAGCAACAACAACAACAACAACATGGACAGAAACAACAGCAGCAGCAGCAACAACAGCAACAACCACAAACAAGTCTTGTCTTAACTGCCCCAGCTTTGGTGGATTGTCATTACTGA 1020 0.4814 MEAPEELSLGGSKDHANIVKGKRTKRVRPQSPIPFSVTANSSTGEGEREDCCNVDDNTNNKNYDINNNNIIVNNINNNNSPTTSSAGLQDSTDEEEDMANCLILLAQGQSRESPKHVEEDVGMNYAKYSSRKFLEAATLGSSRAGYYVYECKTCNRTFPSFQALGGHRASHKKLKAVVPIPQEKKHQHLLSSDEDDFQLKPNNKSPFSLQLGTKASLYNKSKVHECSICGAEFTSGQALGGHMRRHRAPVGIPTTLSFTPLTLEPEEDHPRKKRNVLNLELDLNLPAPEDDQRESKFSFASKQQQQQQHGQKQQQQQQQQQQPQTSLVLTAPALVDCHY 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1252g00014 339 Coils Coil 302 322 - -
Vium1252g00014 339 SUPERFAMILY beta-beta-alpha zinc fingers 148 246 IPR036236 -
Vium1252g00014 339 MobiDBLite consensus disorder prediction 1 49 - -
Vium1252g00014 339 Gene3D Classic Zinc Finger 147 246 - -
Vium1252g00014 339 MobiDBLite consensus disorder prediction 283 325 - -
Vium1252g00014 339 ProSiteProfiles Zinc finger C2H2 type domain profile. 149 176 IPR013087 -
Vium1252g00014 339 ProSiteProfiles Zinc finger C2H2 type domain profile. 224 246 IPR013087 -
Vium1252g00014 339 Pfam C2H2-type zinc finger 223 249 - -
Vium1252g00014 339 Pfam C2H2-type zinc finger 148 173 - -
Vium1252g00014 339 SMART c2h2final6 149 171 IPR013087 -
Vium1252g00014 339 SMART c2h2final6 224 246 IPR013087 -
Vium1252g00014 339 MobiDBLite consensus disorder prediction 298 325 - -
Vium1252g00014 339 PANTHER ZINC FINGER PROTEIN ZAT5 82 311 - -
Vium1252g00014 339 ProSitePatterns Zinc finger C2H2 type domain signature. 151 171 IPR013087 -
Vium1252g00014 339 MobiDBLite consensus disorder prediction 31 47 - -
Vium1252g00014 339 ProSitePatterns Zinc finger C2H2 type domain signature. 226 246 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1252g00014 Vium-Chr1252 52499 54008 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1252g00014 1 339 C2H2 Transcription Factor Family AT5G04390 44.032 1.39e-83 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium1252g00014 zf-C2H2_6 6.7e-13 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1252g00014 - - gmx:100799383 495.738