Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1252g00008 ATGTTTTCTAGGTTGATACATCCCCATGAAGGGGGTGTTGGGCAGGAAGACATGCAGGGTGCTTCCAATCACGCTCACCTCGGAGACCCTTGTCTTGTTCTCACCTCTGATCCCAAACCTCGTCTTCGGTGGACCGCTGACCTTCACGAACGCTTTGTTGACGCTGTCACTCAACTTGGGGGTGCCAGTAAAGCCACTCCTAAAGCGATCATGAGAACCATGAATGTCAAGGGTTTGACGCTCTATCATTTAAAAAGTCATCTTCAGAAGTACAGGCTTGGTAAGCAATCAGGAAAAGATTCTGATGAGGGTTGCAAAGATGGGATGTCAGGTTCGTATCTTCAAGAAAGCCCCGGTACTGACAACTCATCTCCAAAGTTACCAACTTCGGATGCAAACGAGGGTCATGAAGTGAAGGAGGCATTAAGAGCACAAATGGAAGTGCAAAGTAAACTACACTTACTAGTGGAGGTAAATTTCCTTCTCACAATAACTATGGTATTGCAGGCTGAGAAGCACTTGCAAATTCGCCAGGATGCAGAGCGGAGGTACATGGGCATGCTCGAGCGAGCATGTAAGATGTTAGCCGATCAATTTATTGGGGACATAATTATGGACACAGATGGCCAAAAATTTCAAGGGCTGGAAAGTAAAACACCCAGAAGTTCCCTAGTTGATCACGTTGGGTTTTTCCCCCCAGTATGTTCTGAGGTAGGTGGAATGCATGTTTCAGAAGTACCACCTATTCTCCAGCCTCAAGGGGCTGACTGTTCCACTGAAAGTTGTCTGACATCACTTGAGAGTTTAGGAGGGTTGACGCTCGAAGGATCTCCCGGCGGATCGAAGAAGAGGATGCTGAGCTTGGATTCAATGGTAGCACCTTTGATCTGGAGTGAAGCCAACACCAGAACTCAAGGAATCCATTTAGCTCAAGTCAATCCTCCAGGAATAACTAGGTATGGTATGTAG 969 0.4685 MFSRLIHPHEGGVGQEDMQGASNHAHLGDPCLVLTSDPKPRLRWTADLHERFVDAVTQLGGASKATPKAIMRTMNVKGLTLYHLKSHLQKYRLGKQSGKDSDEGCKDGMSGSYLQESPGTDNSSPKLPTSDANEGHEVKEALRAQMEVQSKLHLLVEVNFLLTITMVLQAEKHLQIRQDAERRYMGMLERACKMLADQFIGDIIMDTDGQKFQGLESKTPRSSLVDHVGFFPPVCSEVGGMHVSEVPPILQPQGADCSTESCLTSLESLGGLTLEGSPGGSKKRMLSLDSMVAPLIWSEANTRTQGIHLAQVNPPGITRYGM 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1252g00008 322 MobiDBLite consensus disorder prediction 113 130 - -
Vium1252g00008 322 SUPERFAMILY Homeodomain-like 39 95 IPR009057 -
Vium1252g00008 322 FunFam Myb family transcription factor 38 96 - -
Vium1252g00008 322 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 36 96 IPR017930 -
Vium1252g00008 322 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 9 220 IPR044848 GO:0003700
Vium1252g00008 322 MobiDBLite consensus disorder prediction 93 133 - -
Vium1252g00008 322 Pfam Myb-like DNA-binding domain 42 92 IPR001005 -
Vium1252g00008 322 Gene3D - 38 96 - -
Vium1252g00008 322 NCBIfam myb-like DNA-binding domain, SHAQKYF class 39 94 IPR006447 GO:0003677
Vium1252g00008 322 Pfam MYB-CC type transfactor, LHEQLE motif 137 194 IPR025756 -
Vium1252g00008 322 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1252g00008 Vium-Chr1252 17872 21440 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1252g00008 8 266 G2-like Transcription Factor Family AT3G24120 44.776 8.70e-63 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vium1252g00008 Myb_CC_LHEQLE 1.4e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1252g00008 - - vum:124825518 624.009