Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vium1252g00008 | ATGTTTTCTAGGTTGATACATCCCCATGAAGGGGGTGTTGGGCAGGAAGACATGCAGGGTGCTTCCAATCACGCTCACCTCGGAGACCCTTGTCTTGTTCTCACCTCTGATCCCAAACCTCGTCTTCGGTGGACCGCTGACCTTCACGAACGCTTTGTTGACGCTGTCACTCAACTTGGGGGTGCCAGTAAAGCCACTCCTAAAGCGATCATGAGAACCATGAATGTCAAGGGTTTGACGCTCTATCATTTAAAAAGTCATCTTCAGAAGTACAGGCTTGGTAAGCAATCAGGAAAAGATTCTGATGAGGGTTGCAAAGATGGGATGTCAGGTTCGTATCTTCAAGAAAGCCCCGGTACTGACAACTCATCTCCAAAGTTACCAACTTCGGATGCAAACGAGGGTCATGAAGTGAAGGAGGCATTAAGAGCACAAATGGAAGTGCAAAGTAAACTACACTTACTAGTGGAGGTAAATTTCCTTCTCACAATAACTATGGTATTGCAGGCTGAGAAGCACTTGCAAATTCGCCAGGATGCAGAGCGGAGGTACATGGGCATGCTCGAGCGAGCATGTAAGATGTTAGCCGATCAATTTATTGGGGACATAATTATGGACACAGATGGCCAAAAATTTCAAGGGCTGGAAAGTAAAACACCCAGAAGTTCCCTAGTTGATCACGTTGGGTTTTTCCCCCCAGTATGTTCTGAGGTAGGTGGAATGCATGTTTCAGAAGTACCACCTATTCTCCAGCCTCAAGGGGCTGACTGTTCCACTGAAAGTTGTCTGACATCACTTGAGAGTTTAGGAGGGTTGACGCTCGAAGGATCTCCCGGCGGATCGAAGAAGAGGATGCTGAGCTTGGATTCAATGGTAGCACCTTTGATCTGGAGTGAAGCCAACACCAGAACTCAAGGAATCCATTTAGCTCAAGTCAATCCTCCAGGAATAACTAGGTATGGTATGTAG | 969 | 0.4685 | MFSRLIHPHEGGVGQEDMQGASNHAHLGDPCLVLTSDPKPRLRWTADLHERFVDAVTQLGGASKATPKAIMRTMNVKGLTLYHLKSHLQKYRLGKQSGKDSDEGCKDGMSGSYLQESPGTDNSSPKLPTSDANEGHEVKEALRAQMEVQSKLHLLVEVNFLLTITMVLQAEKHLQIRQDAERRYMGMLERACKMLADQFIGDIIMDTDGQKFQGLESKTPRSSLVDHVGFFPPVCSEVGGMHVSEVPPILQPQGADCSTESCLTSLESLGGLTLEGSPGGSKKRMLSLDSMVAPLIWSEANTRTQGIHLAQVNPPGITRYGM | 322 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vium1252g00008 | 322 | MobiDBLite | consensus disorder prediction | 113 | 130 | - | - | |
Vium1252g00008 | 322 | SUPERFAMILY | Homeodomain-like | 39 | 95 | IPR009057 | - | |
Vium1252g00008 | 322 | FunFam | Myb family transcription factor | 38 | 96 | - | - | |
Vium1252g00008 | 322 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 36 | 96 | IPR017930 | - | |
Vium1252g00008 | 322 | PANTHER | MYB FAMILY TRANSCRIPTION FACTOR PHL11 | 9 | 220 | IPR044848 | GO:0003700 | |
Vium1252g00008 | 322 | MobiDBLite | consensus disorder prediction | 93 | 133 | - | - | |
Vium1252g00008 | 322 | Pfam | Myb-like DNA-binding domain | 42 | 92 | IPR001005 | - | |
Vium1252g00008 | 322 | Gene3D | - | 38 | 96 | - | - | |
Vium1252g00008 | 322 | NCBIfam | myb-like DNA-binding domain, SHAQKYF class | 39 | 94 | IPR006447 | GO:0003677 | |
Vium1252g00008 | 322 | Pfam | MYB-CC type transfactor, LHEQLE motif | 137 | 194 | IPR025756 | - | |
Vium1252g00008 | 322 | MobiDBLite | consensus disorder prediction | 1 | 24 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vium1252g00008 | Vium-Chr1252 | 17872 | 21440 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vium1252g00008 | 8 | 266 | G2-like Transcription Factor Family | AT3G24120 | 44.776 | 8.70e-63 | 199 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | GARP-G2-like | Vium1252g00008 | Myb_CC_LHEQLE | 1.4e-08 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vium1252g00008 | - | - | vum:124825518 | 624.009 |