Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium1252g00003 ATGTTTTCTAGGTTGATACATCCCCATGAAGGGGGTGTTGGGCAGGAAGACATGCAGGGTGCTTCCAATCACGCTCACCTCGGAGACCCTTGTCTTGTTCTCACCTCTGATCCCAAACCTCGTCTTCGGTGGACCGCTGACCTTCACGAACGCTTTGTTGACGCTGTCACTCAACTTGGGGGTGCCAGTAAAGCCACTCCTAAAGCGATCATGAGAACCATGAATGTCAAGGGTTTGACGCTCTATCATTTAAAAAGTCATCTTCAGAAGTACAGGCTTGGTAAGCAATCAGGAAAAGATTCTGATGAGGGTTGCAAAGATGGTTCGTATCTTCAAGAAAGCCCCGGTACTGACAACTCATCTCCAAAGTTACCAACTTCGGATGCAAACGAGGGTCATGAAGTGAAGGAGGCATTAAGAGCACAAATGGAAGTGCAAAGTAAACTACACTTACTAGTGGAGGTAAATTTCCTTCTCACAATAACTATGGTATTGCAGGCTGAGAAGCACTTGCAAATTCGCCAGGATGCAGAGCGGAGGTACATGGGCATGCTCGAGCGAGCATGTAAGATGTTAGCCGATCAATTTATTGGGGACATAATTATGGACACAGATGGCCAAAAATTTCAAGGGCTGGAAAGTAAAACACCCAGAAGTTCCCTAGTTGATCACGTTGGGTTTTTCCCCCCAGTATGTTCTGAGGTAGGTGGAATGCATGTTTCAGAAGTACCACCTATTCTCCAGCCTCAAGGGGCTGACTGTTCCACTGAAAGTTGTCTGACATCACTTGAGAGTTTAGGAGGGTTGACGCTCGAAGGATCTCCCGGCGGATCGAAGAAGAGGATGCTGAGCTTGGATTCAATGGTAGCACCTTTGATCTGGAGTGAAGCCAACACCAGAACTCAAGGAATCCATTTAGCTCAAGTCAATCCTCCAGGAATAACTAGGTATGGTATGTAG 960 0.4677 MFSRLIHPHEGGVGQEDMQGASNHAHLGDPCLVLTSDPKPRLRWTADLHERFVDAVTQLGGASKATPKAIMRTMNVKGLTLYHLKSHLQKYRLGKQSGKDSDEGCKDGSYLQESPGTDNSSPKLPTSDANEGHEVKEALRAQMEVQSKLHLLVEVNFLLTITMVLQAEKHLQIRQDAERRYMGMLERACKMLADQFIGDIIMDTDGQKFQGLESKTPRSSLVDHVGFFPPVCSEVGGMHVSEVPPILQPQGADCSTESCLTSLESLGGLTLEGSPGGSKKRMLSLDSMVAPLIWSEANTRTQGIHLAQVNPPGITRYGM 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium1252g00003 319 SUPERFAMILY Homeodomain-like 39 95 IPR009057 -
Vium1252g00003 319 Pfam MYB-CC type transfactor, LHEQLE motif 134 191 IPR025756 -
Vium1252g00003 319 FunFam Myb family transcription factor 38 96 - -
Vium1252g00003 319 Pfam Myb-like DNA-binding domain 42 92 IPR001005 -
Vium1252g00003 319 Gene3D - 38 96 - -
Vium1252g00003 319 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 36 96 IPR017930 -
Vium1252g00003 319 NCBIfam myb-like DNA-binding domain, SHAQKYF class 39 94 IPR006447 GO:0003677
Vium1252g00003 319 MobiDBLite consensus disorder prediction 112 127 - -
Vium1252g00003 319 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 9 217 IPR044848 GO:0003700
Vium1252g00003 319 MobiDBLite consensus disorder prediction 94 130 - -
Vium1252g00003 319 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium1252g00003 Vium-Chr1252 14163 21440 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium1252g00003 8 263 G2-like Transcription Factor Family AT3G24120 45.896 2.32e-63 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vium1252g00003 Myb_CC_LHEQLE 1.4e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium1252g00003 - - vum:124825518 612.838