Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12523g00003 ATGCTGATAACCACCGGCTGGTGGTTGTCTACAATCTGCGTCATGGAAGGTGTTATTGTGAGAAGAGTTATTCCTTCAGATAACAGTTGTCTCTTCAATGCAGTTGGATATGTAAGGGATGACAAGAAGAAAGCCCCTGAGTTGCGACAGGTTATAGCTGCAACAGTGGCAAGTGATCCACAGAAATATTGTGAAGCATTTCTTGGGAAGCCAAATGCAGAATATTGTAACTGGATTCTTGACTCAGAGAAGTGGGGAGGTGCAATCGAACTTGCAATATTAGCAGATTATTATGGACGTGAAATTGCAGCATATGATATCCAGACAACTCGATGTGATTTGTATGGTCAGGAAAGTAACTACTCTGAAAGAGTGATGCTAATTTATGACGGTCTCCACTATGATGCATTAGTGATGTCTCCCGTTGAGGATGCTCCTGAAGAGTTTGATCAGACCATATTTGCGGTTCAGCCGAACAGAAGCATTGGACCTGTGGAGAGGCTTGCTCTAAATTTTGTGAAGGACCAGCAGAGGAAACGGAGTTACACTGACACTTCCAAGTTCACTCTGCGCTGTGGGGTATGCCAAATTGGAGTAGTTGGCCAAAAGGAGGCAGTTGAGCATGCACAGGCCACTGGTCATGTTAACTTTCAAGAGTATAGATGA 666 0.4399 MLITTGWWLSTICVMEGVIVRRVIPSDNSCLFNAVGYVRDXDKKKAPELRQVIAATVASDPQKYCEAFLGKPNAEYCNWILDSEKWGGAIELAILADYYGREIAAYDIQTTRCDLYGQESNYSERVMLIYDGLHYDALVMSPVEDAPEEFDQTIFAVQPNRSIGPVERLALNFVKDQQRKRSYTDTSKFTLRCGVCQIGVVGQKEAVEHAQATGHVNFQEYR 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12523g00003 222 CDD OTU_plant_OTU1_2-like 17 180 - -
Vium12523g00003 222 Pfam OTU-like cysteine protease 26 118 IPR003323 -
Vium12523g00003 222 PANTHER HIV-INDUCED PROTEIN-7-LIKE PROTEASE 19 220 - -
Vium12523g00003 222 FunFam ubiquitin thioesterase OTU1 15 187 - -
Vium12523g00003 222 ProSiteProfiles OTU domain profile. 19 141 IPR003323 -
Vium12523g00003 222 SUPERFAMILY Cysteine proteinases 20 139 IPR038765 -
Vium12523g00003 222 Gene3D - 8 187 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12523g00003 15 222 C2H2 Transcription Factor Family AT1G50670 80.288 1.11e-126 355
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12523g00003 K13719 - gmx:100793701 401.364