Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium12523g00001 ATGCCCATTGCCACCACTTCTCTCACTGTCACCGACTGGTTTTCTGAAATGATAGAAACAGTAACCGCAAGTTTCAAGCATCTTTGTAATGGTGGTTCTGTAGTTGGGCTATTCATGAAGGCTTTCGAGAGAGTTCTTTTTGCCTTATTTACTTGCATTGTGGCACTTGGAGGGTCAATAGTGGGAACAATTGCAGGAGGCATAAAAGGGCAGACCACAGAAACTGGTTTTCTTGATGGTGCTGGCAAAGGAGCAATCACAGGAGCCATTGCAGCATTGGAATTGATAAATTTTGACTCTGCTGCTGATGAGCCAGTGTCTAAGTTTGCCCTGTTGAGAAGTTTATTGAATGGGAAAGTCTTTATGGAATGGATATGTCCAGCTGTGGCAAAACTCTATCAGTTGCATGTAACAATTAACACACTGGAAACAATATACCAAGAAGTATCAGACATTTATGATATCAGGGGAGCAAGAGGGGTACCGCAGAATGTGATTATGAAGCTTCAATTTCAGCCATTCAACTCTGGAAAAATGTCCAAGTTATACAACATGTCTTGCTGCTCAATTTGCTTCCAAGAGTTTGAGGATGGAGAATTGGTGAGGATACTTCCAAAATGTGGCCACCTTTTTCACCTAGAATGCATAGACAAGTGGCTAGTCCAACAAGGATCATGCCCAATGTGCAGAACTTATGTTCCAGACCACATTCTTTAA 717 0.4198 MPIATTSLTVTDWFSEMIETVTASFKHLCNGGSVVGLFMKAFERVLFALFTCIVALGGSIVGTIAGGIKGQTTETGFLDGAGKGAITGAIAALELINFDSAADEPVSKFALLRSLLNGKVFMEWICPAVAKLYQLHVTINTLETIYQEVSDIYDIRGARGVPQNVIMKLQFQPFNSGKMSKLYNMSCCSICFQEFEDGELVRILPKCGHLFHLECIDKWLVQQGSCPMCRTYVPDHIL 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium12523g00001 238 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 153 236 IPR013083 -
Vium12523g00001 238 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 38 231 IPR044523 -
Vium12523g00001 238 SUPERFAMILY RING/U-box 187 234 - -
Vium12523g00001 238 Pfam Ring finger domain 188 230 IPR001841 -
Vium12523g00001 238 CDD RING-H2_EL5-like 187 230 - -
Vium12523g00001 238 ProSiteProfiles Zinc finger RING-type profile. 188 230 IPR001841 -
Vium12523g00001 238 SMART ring_2 188 229 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium12523g00001 Vium-Chr12523 4602 7090 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium12523g00001 48 233 C3H Transcription Factor Family AT5G66070 37.186 6.67e-36 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium12523g00001 - K19041 gmx:100305612 378.252